| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,454,260 | G→A | 5.5% | pseudogene (742/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,454,260 | 0 | G | A | 5.5% | 283.0 / 4.4 | 90 | pseudogene (742/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (45/40); new base A (2/3); total (47/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01 | |||||||||||
GCGCGTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTC > NC_000913/2454119‑2454405 | gcgcGTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGc < 8:53366/148‑1 (MQ=255) gcgcAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATATTTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGa > 1:324117/1‑148 (MQ=255) gcgcAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGa < 2:324117/148‑1 (MQ=255) gcgcAGATTGCGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACAAAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGac > 1:106027/1‑149 (MQ=255) gcAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGATTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGactc > 4:374281/1‑149 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGc < 7:410727/132‑1 (MQ=255) aTTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGc > 8:410727/1‑132 (MQ=255) ttGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGactccactc < 6:209693/149‑1 (MQ=255) tGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGactccactcc > 3:412920/1‑149 (MQ=255) gCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttt > 4:241497/1‑149 (MQ=255) gCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttt < 1:156275/149‑1 (MQ=255) gCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttt > 8:369465/1‑149 (MQ=255) cAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑ttttt > 2:433196/1‑149 (MQ=255) aaCATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttttt > 4:361596/1‑149 (MQ=255) cATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttttttt < 7:410684/149‑1 (MQ=255) tttGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGactccactcc > 4:230262/1‑137 (MQ=255) tttGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGactccactcc < 3:230262/137‑1 (MQ=255) tGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑GTTTTTTtgtgt > 6:238821/1‑149 (MQ=255) tGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑GTTTTTTtgtgt > 1:241046/1‑149 (MQ=255) gATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTtgtgtg > 6:81507/1‑149 (MQ=255) aTCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttttttt > 6:72748/1‑143 (MQ=255) aTCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑tttttttt < 5:72748/143‑1 (MQ=255) gTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTtgt > 1:167903/1‑142 (MQ=255) gTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTtgt < 2:167903/142‑1 (MQ=255) tCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGc > 7:7035/1‑118 (MQ=255) tCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGc < 8:7035/118‑1 (MQ=255) tCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATc > 7:102011/1‑149 (MQ=255) tCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATc > 4:230301/1‑149 (MQ=255) tCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAAGAGCGACTCCACTCCCA‑TTTTTTTtgt > 1:60445/1‑141 (MQ=255) tCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAAAAGCGACTCCACTCCCA‑TTTTTTTtgt < 2:60445/141‑1 (MQ=255) cTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATcgccgc > 3:141620/1‑148 (MQ=255) acacTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCaaa < 5:81507/149‑1 (MQ=255) acTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑ttttttt < 8:2351/127‑1 (MQ=255) acTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑ttttttt > 7:2351/1‑127 (MQ=255) ccaccaACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCAt < 3:361596/148‑1 (MQ=255) ccaccaACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATc < 3:241497/149‑1 (MQ=255) aCATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcat > 7:93803/1‑148 (MQ=255) aaTTAAAACCGTCGAAAATATCGGAATTGAGGTATTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcatcatca > 7:377359/1‑149 (MQ=255) aaTTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGtcatcatca > 1:74800/1‑149 (MQ=255) aaTTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTATAATGACGGTAACGCCCGCCAGGCATAATAGCGACTACACTCCCA‑TTATTTATGTGTGACATCGCCGCCAAATTCATCGtcataatca > 6:327658/1‑149 (MQ=255) ttAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTcatcatcat > 8:88076/1‑148 (MQ=255) aaaCCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACt < 1:70755/149‑1 (MQ=255) aaCCGTCGAAATTATCGGACTTGAGGTAAGCTTCGCCCAGCGCCCGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATATTAGCGACTCCACTCCCA‑TTTTTTTTGTGGGTCATCGCCGCCAAATTCATCGTCATCATCATTACTg < 6:203820/149‑1 (MQ=255) tCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGcgcg > 6:322149/1‑148 (MQ=255) gAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt > 8:323007/1‑149 (MQ=255) aaaTATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt < 5:327658/147‑1 (MQ=255) aaTATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑ttttt > 3:21006/1‑95 (MQ=255) aaTATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑ttttt < 4:21006/95‑1 (MQ=255) tatCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa < 3:131858/149‑1 (MQ=255) tatCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCACACCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa < 1:285773/149‑1 (MQ=255) ggAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAg < 4:412920/148‑1 (MQ=255) ggAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGt < 8:102011/149‑1 (MQ=255) ttGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGt < 7:323007/149‑1 (MQ=255) aGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCAt > 8:58578/1‑94 (MQ=255) aGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCAt < 7:58578/94‑1 (MQ=255) aGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCt < 2:74800/148‑1 (MQ=255) aaTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt > 7:212082/1‑130 (MQ=255) aaTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAg > 8:192202/1‑149 (MQ=255) aaTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCACCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAg > 7:251363/1‑149 (MQ=255) aaTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCACCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAg > 7:258045/1‑149 (MQ=255) aaTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGAACGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCATTTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt < 8:212082/130‑1 (MQ=255) aTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCCTCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAg < 5:238821/148‑1 (MQ=255) aTCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGt < 8:93803/149‑1 (MQ=255) cGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAgc < 8:388125/148‑1 (MQ=255) cGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAgc < 3:230301/148‑1 (MQ=255) cGCCCAGCGCCAGTTTGGATTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAgc < 8:377359/148‑1 (MQ=255) gCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAgcgc < 1:433196/149‑1 (MQ=255) cccAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGt > 1:11802/1‑142 (MQ=255) cccAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGt < 2:11802/142‑1 (MQ=255) ccAGCGCCAGTTTGTCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa < 2:76256/125‑1 (MQ=255) ccAGCGCCAGTTTGCCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa > 1:76256/1‑125 (MQ=255) gcCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACg > 3:326633/1‑149 (MQ=255) aGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt < 7:27351/112‑1 (MQ=255) aGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTAt > 8:27351/1‑112 (MQ=255) gTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCAt < 7:369465/149‑1 (MQ=255) gTTTGGCTTTTAATGACGGTAACGCCCACCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCAt < 8:251363/149‑1 (MQ=255) gTTTGGCTTTTAATGACGGTAACGCCCACCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCAt < 8:258045/149‑1 (MQ=255) tGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCGA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATgg < 2:106027/148‑1 (MQ=255) ggCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGc < 4:141620/148‑1 (MQ=255) cTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTAGATAGTTGGTCTGCCAGTAAGCGCGCATCAGCAATGGccc > 2:162683/1‑148 (MQ=255) ttttAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGccc > 7:42824/1‑147 (MQ=255) ttttAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGccc > 1:66852/1‑147 (MQ=255) ttttAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGACGCCAAATTCATCGTCATCATCATTACTGCGAGTATGTTGATAGTTGGTCTGCCAGTCCGCGCGCATACGCCATGGcac > 3:39102/1‑145 (MQ=255) ttttAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGCGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGccc > 8:212849/1‑147 (MQ=255) ttttAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGCGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGccc > 4:158406/1‑147 (MQ=255) aaTGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAATTTCATCGACATCAGAATTCCTGCGAGTAGGTTAATAGTTGGTCTGACAGTCAGCGCGAATGCGCCATGGCCACACGt > 6:67797/1‑148 (MQ=255) aTGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGtt < 7:192202/148‑1 (MQ=255) tGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTaa > 3:349314/1‑149 (MQ=255) tGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTaa > 1:19370/1‑149 (MQ=255) cGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAAcc < 4:326633/148‑1 (MQ=255) cccgccAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGAATACGCCATGGCCACAGGTTAACCACGACCGTc > 1:84352/1‑149 (MQ=255) ccgccAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa < 5:249077/91‑1 (MQ=255) ccgccAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGa > 6:249077/1‑91 (MQ=255) | GCGCGTAGCCGCGCAGATTGGGAGGCAACATTTGATCGTCAGTGCTGACACTGCCACCAACATAATTAAAACCGTCGAAAATATCGGAATTGAGGTAATCTTCGCCCAGCGCCAGTTTGGCTTTTAATGACGGTAACGCCCGCCAGGCATAATAGCGACTCCACTCCCA‑TTTTTTTTGTGTGTCATCGCCGCCAAATTCATCGTCATCATCATTACTGCGCGTATGTTGATAGTTGGTCTGCCAGTCAGCGCGCATACGCCATGGCCCCAGGTTAACCCCGACCGTC > NC_000913/2454119‑2454405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |