| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,188,406 | C→T | 13.7% | E457E (GAG→GAA) | phoQ ← | sensory histidine kinase in two‑component regulatory system with PhoP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,188,406 | 0 | C | T | 13.7% | 187.2 / 18.3 | 73 | E457E (GAG→GAA) | phoQ | sensory histidine kinase in two‑component regulatory system with PhoP |
| Reads supporting (aligned to +/- strand): ref base C (32/30); new base T (6/4); total (38/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
GGTATCTGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACCACAATATAGAGAT > NC_000913/1188259‑1188554 | ggTATCTGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCt > 7:322537/1‑149 (MQ=255) gTATCTGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTAccc < 4:179236/147‑1 (MQ=255) gTATCTGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTAccc < 6:264513/147‑1 (MQ=255) tCTGCAACCGATTTTAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACAAAAAATCACCTCCATCCGCGCACAGCCCAGCATGCTCTCTCCGGCGACGATTTTAAGCTCata > 1:272071/1‑149 (MQ=255) tGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCTTCATAtt > 7:160931/1‑149 (MQ=255) tGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTAATCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCACCATGCTCTCTCAGGCGACGATTTTACCCTCAAAtt > 7:197279/1‑149 (MQ=255) gCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTg > 6:11034/1‑149 (MQ=255) aaCCGATTATAACGGAGGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCCGCATGCGCTCTCCGGCGACGAGTTTACCCTCATATTGCt > 6:101077/1‑149 (MQ=255) ccGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCTTCATATTGCTCg < 4:54784/149‑1 (MQ=255) ccGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCAGGCGACGATTTTACCTTCATATTGCTCg > 4:234261/1‑149 (MQ=255) cGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGTCGATTTTACCCTCATATTGCTCgg > 8:155245/1‑149 (MQ=255) gATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGAATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCgg < 4:175432/149‑1 (MQ=255) aaCGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGTCGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTAcc < 7:155245/148‑1 (MQ=255) aCGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGc < 8:75034/149‑1 (MQ=255) tAATGGGTGAAGTATGGGCATTTTTATTCATCTTTCGGCGGAGTATGCTGGGGTACAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAg < 6:89884/149‑1 (MQ=255) tAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAg < 8:322537/149‑1 (MQ=255) gTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACTCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTa > 8:21509/1‑148 (MQ=255) aaGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTa < 5:78581/145‑1 (MQ=255) aaGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTa > 6:78581/1‑145 (MQ=255) aaGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACAcc > 5:438506/1‑149 (MQ=255) aaGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTacac < 6:174705/148‑1 (MQ=255) gTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTcgcg > 8:45697/1‑126 (MQ=255) gTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTcgcg < 7:45697/126‑1 (MQ=255) gggCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGcc > 4:253349/1‑148 (MQ=255) atatTTATTCATATTTCTGCGCAGAATGCTGTCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTACGGCGACGATTTTACACTCATATTGCTCGGTGATTTCGCTGGCTACAGCCAGCCCTACACCTTGCCCAggg < 2:272071/149‑1 (MQ=255) tattCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACATCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTAACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTa > 4:299127/1‑148 (MQ=255) tCATCTTTCGGCGCAGAATGCTGGCGACCGAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAg > 8:343514/1‑148 (MQ=255) aTCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTAt > 3:399969/1‑149 (MQ=255) cTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGcc < 5:336279/132‑1 (MQ=255) cTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGcc > 6:336279/1‑132 (MQ=255) gcgcAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGt < 1:461899/149‑1 (MQ=255) aGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGAc < 7:185250/149‑1 (MQ=255) gACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGaa > 5:342222/1‑148 (MQ=255) gACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGaa > 3:328951/1‑148 (MQ=255) gACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCAGGCGACGATTTTACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGaaa < 3:234261/149‑1 (MQ=255) aaaaaTCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGa < 4:399969/149‑1 (MQ=255) aaaTCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGAcc < 3:293366/149‑1 (MQ=255) aaTCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACct < 8:300519/149‑1 (MQ=255) cTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCgct > 7:132235/1‑149 (MQ=255) cATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCgcttgc < 6:342222/149‑1 (MQ=255) cATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCgcttgc < 8:132235/149‑1 (MQ=255) aTCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTc > 5:156006/1‑128 (MQ=255) aTCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTc < 6:156006/128‑1 (MQ=255) aTCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCgcttgct > 8:72956/1‑149 (MQ=255) cgcgCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGAGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTaa > 2:272023/1‑149 (MQ=255) gcgcACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAAt > 4:59021/1‑149 (MQ=255) gCCCAGCATGCTCTGTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGTGGGCTACCGCCAGACCTACACCTTACCAAGTGCGTAATGTATCAACCCGTTGACAACGGTCGAATATGACCTCTCGCTTGCTTAATGGAATAc < 8:197279/149‑1 (MQ=255) ccAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCgcttgc < 1:104972/135‑1 (MQ=255) ccAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCgcttgc > 2:104972/1‑135 (MQ=255) cAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCCGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATTCCCTCTCGCTTGCTTAATGGAATACCgg > 6:5092/1‑149 (MQ=255) cAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACgg > 2:183831/1‑112 (MQ=255) cAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACgg < 1:183831/112‑1 (MQ=255) cAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCgg > 1:356803/1‑149 (MQ=255) atcATGCTCTCTCCGGCGACGATTTTACCATCATATTGCTCGGTGATTTAGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCggg < 2:356803/147‑1 (MQ=255) aGCATGCTCTCTCCGGCGACGATTTTACTCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCggg < 7:21509/149‑1 (MQ=255) tGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCca > 3:370964/1‑149 (MQ=255) gCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCcat > 3:268417/1‑149 (MQ=255) ctctctCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCcat > 1:175127/1‑148 (MQ=255) tctctcCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGGCCTCTCGCTTGCTTAATGGAATACCGGGGCcatca > 2:389017/1‑149 (MQ=255) tctctcCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAAGGACCTCTCGCTTGCTTAATGGAATACCGGGGCcat > 8:419466/1‑147 (MQ=255) tctcCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCcatca < 3:59021/147‑1 (MQ=255) cGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTc < 4:370964/148‑1 (MQ=255) cGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGAGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTc < 1:272023/148‑1 (MQ=255) ggCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGaaa < 1:291316/103‑1 (MQ=255) ggCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGaaa > 2:291316/1‑103 (MQ=255) ggCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGa < 5:11034/149‑1 (MQ=255) cgacgaTTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGAcc < 5:101077/149‑1 (MQ=255) gacgaTTTTACCTTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACca > 1:222761/1‑149 (MQ=255) gacgaTTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACCCCTTGCCCAGGGCGTAAAGTATCAACACGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAAAGGCATACCGGGGCCATCATCCTCGACca > 8:326419/1‑149 (MQ=255) gacgaTTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACca > 2:5822/1‑149 (MQ=255) gaTTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTg > 5:153046/1‑84 (MQ=255) gaTTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTg < 6:153046/84‑1 (MQ=255) gaTGTTACCCTCATATTGCTCGGGGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGTTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGAGGCCATCATCCTCGACCACaa < 3:99976/149‑1 (MQ=255) aCCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACCACAATATag < 2:175127/148‑1 (MQ=255) aCCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACCACAATATag < 1:5822/148‑1 (MQ=255) cccTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGGCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACCACAATATagag < 3:253349/149‑1 (MQ=255) ccTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAAc > 8:236322/1‑70 (MQ=255) ccTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAAc < 7:236322/70‑1 (MQ=255) ccTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGATGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCggg > 3:144116/1‑121 (MQ=255) ccTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGATGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCggg < 4:144116/121‑1 (MQ=255) cTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACCACAATATAGAGAt < 4:328951/149‑1 (MQ=255) | GGTATCTGCAACCGATTATAACGGATGCTTAACGTAATGCGTGAAGTATGGGCATATTTATTCATCTTTCGGCGCAGAATGCTGGCGACCAAAAATCACCTCCATCCGCGCACCGCCCAGCATGCTCTCTCCGGCGACGATTTTACCCTCATATTGCTCGGTGATTTCGCGGGCTACCGCCAGCCCTACACCTTGCCCAGGGCGTAAAGTATCAACCCGTTGACCACGGTCGAAAATGACCTCTCGCTTGCTTAATGGAATACCGGGGCCATCATCCTCGACCACAATATAGAGAT > NC_000913/1188259‑1188554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |