New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3534496	89 (0.830)	9 (0.090)	6/238	NT	9.7%	intergenic (+56/+20)	pck/envZ	phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR
	?	NC_000913	= 3534502	87 (0.890)					intergenic (+62/+14)	pck/envZ	phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR

GAAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3534339‑3534496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacgggaggcGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCCA  <  NC_000913/3534502‑3534355                                                                                                                                                                                                                                                                                                                    GAAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTAACTTATAGAAAGCAA                                                                                                                                                                >  8:216773/1‑148  AAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAA                                                                                                                                                              >  8:77229/1‑149  AAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAA                                                                                                                                                              >  8:138342/1‑149  AAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAA                                                                                                                                                              <  3:324571/149‑1   AAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAAC                                                                                                                                                             <  8:13541/149‑1   AAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAAC                                                                                                                                                             >  3:332921/1‑149    AAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACG                                                                                                                                                            >  6:22904/1‑149      AGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGG                                                                                                                                                           >  3:380232/1‑148       GCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                         <  1:460185/149‑1       GCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                         <  5:17908/149‑1        CCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAG                                                                                                                                                        >  1:409333/1‑149        CCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAG                                                                                                                                                        <  4:188145/149‑1                CTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTTCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGT                                                                                                                                                <  1:217923/149‑1                 TGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                         >  4:313485/1‑139                 TGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                         <  3:313485/139‑1                            TTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCGTTTT                                                                                                                                    <  6:192280/149‑1                            TTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGTGCCTCCCGTTTT                                                                                                                                    <  7:77229/149‑1                            TTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCGGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                         <  5:407962/128‑1                            TTTATCGACAACTTCGAAAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGA                                                                                                                                                         >  6:407962/1‑128                                                             CCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGT                                                                                                                                                <  3:368981/104‑1                                                             CCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCGAAGGT                                                                                                                                                >  4:368981/1‑104                                                                                     GCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCACCTTCGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGA                                                                           <  2:365401/149‑1                                                                                     GCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGCACCTTCGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGA                                                                           <  2:58756/149‑1                                                                                                                               TCCAGTATCTTATAGAAAGCAAAACGGGAGGCACCTTCGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTA                                                                 >  1:341514/1‑117                                                                                                                               TCCAGTATCTTATAGAAAGCAAAACGGGAGGCACCTTCGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTA                                                                 <  2:341514/117‑1                                                                                                                                                        GGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTT        >  3:339894/1‑149                                                                                                                                                        GGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTT        >  2:409333/1‑149                                                                                                                                                        GGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAA              >  5:291401/1‑143                                                                                                                                                        GGGAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAA              <  6:291401/143‑1                                                                                                                                                          GAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTC      >  6:169697/1‑149                                                                                                                                                          GAGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTC      >  3:94191/1‑149                                                                                                                                                           AGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCG     <  5:169697/149‑1                                                                                                                                                           AGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTC      <  3:8405/148‑1                                                                                                                                                           AGGCGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTC      >  4:8405/1‑148                                                                                                                                                              CGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCCA  <  8:129635/149‑1                                                                                                                                                                                                                                                                                                                    GAAAAAGCCGAAACCCTGGCGAAACTGTTTATCGACAACTTCGATAAATACACCGACACCCCTGCGGGTGCCGCGCTGGTAGCGGCTGGTCCGAAACTGTAATGATTTGAAGCTGGAGAATATCTATCCAGTATCTTATAGAAAGCAAAACGGGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3534339‑3534496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacgggaggcGAAGGTGCCTCCCGTTTTGCTTTCTATAAGATACTGGATAGATATTCTCCAGCTTCAAATCATTACAGTTTCGGACCAGCCGCTACCAGCGCGGCACCCGCAGGGGTGTCGGTGTATTTATCGAAGTTGTCGATAAACAGTTTCGCCA  <  NC_000913/3534502‑3534355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.