| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4251251 = | 197 (1.840) | 5 (0.050) | 5/244 | NT | 2.7% | pseudogene (291/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913 | 4251275 = | 172 (1.710) | pseudogene (315/1323 nt) | yjbI | pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4251405‑4251251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcaactTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGA > NC_000913/4251275‑4251421 TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTTCGAGAAG > 1:367642/1‑149TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAG > 2:152282/1‑149TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAG > 7:493133/1‑149TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAA < 8:42448/148‑1TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAA < 4:71301/148‑1TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAA < 5:293134/148‑1TCAAAATCGATTTAAAAAATGATATTTCTTTCGCAGACAGAAACTCTGCTCTGGTGAAGTCCGAAGCGTAAAGATAACAATTATCGAAGAATGAATTTCTAAACTGACATTCGCGAAAATTACTATGACCAAGTTGACACTGCGAGAAG > 2:610/1‑149 atATTTGATTTAATTAATGATATTTCTTTGTGAGTCTGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGTTAACAATTATCGTAGTTTGAATTTATAATCTGACATTCTCGAAAATTAATATGACCAAGTTGACTCTGCGAGAAGT < 6:442355/146‑1 AAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGT > 4:425499/1‑148 AATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTC > 4:81822/1‑148 AATTCGATTTAATAAATGATATCTCTTTGGCAGACAAAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATATGACAGTCTCTAAAATTACTATGACAAAGTTGACTCTGCGAGAAGTC > 2:502025/1‑148 ATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAA > 6:258716/1‑149 ATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAA < 3:224837/149‑1 ATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAA < 4:6011/149‑1 TTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAAC < 7:26498/149‑1 TTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAAC > 7:287881/1‑149 TTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAAC < 8:297146/149‑1 TTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAA > 6:152689/1‑148 TTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAA < 5:152689/148‑1 TCGATTTAATAAATGATATTTCTTTGGCAGACATAAACTCTGCTCTGGTTAAGTGCGAAGCGTAAAGATAAGAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAAC < 4:129422/148‑1 CGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAACT < 8:287881/148‑1 AGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAG < 5:362611/149‑1 CGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGT > 1:264684/1‑104 CGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGT < 2:264684/104‑1 TAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAACT > 1:484112/1‑87 TAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAACT < 2:484112/87‑1 GTTGACTCTGCGAGAAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGA > 7:316048/1‑105 GTTGACTCTGCGAGAAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGA < 8:316048/105‑1 CGAGAAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAG < 6:362611/147‑1 AGTCAACTTGGTCATAGTAATTTTCGCGAATGTCTGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTAT > 2:99745/1‑149 TCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGT > 1:210726/1‑149 TCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGT > 1:364715/1‑149 TCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGT > 4:277341/1‑149 TCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGT > 5:113691/1‑149 TCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTG < 7:282676/143‑1 TCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTG > 8:282676/1‑143 AACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTT > 3:261827/1‑149 AACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTT < 7:259099/149‑1 AACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTT < 4:201487/148‑1 ACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTT > 8:93721/1‑148 CTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGGACTTCACCAGAGCAGAGTTTCTGTCTGCCATAGTAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGA < 3:129422/149‑1 CTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGA < 2:364715/149‑1 CTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGA < 3:6011/149‑1 CTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGA < 5:130777/149‑1 TCAAATTCGATTTAATAAATGATATTTCTTTGGCAGACAGAAACTCTGCTCTGGTGAAGTGCGAAGCGTAAAGATAACAATTATCGAAGTTTGAATTTCTAATCTGACATTCGCGAAAATTACTATGACCAAGTTGACTCTGCGAGAAGTCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4251405‑4251251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcaactTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGA > NC_000913/4251275‑4251421 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |