New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4497944 =	130 (1.210)	3 (0.030)	3/242	NT	2.5%	intergenic (+4/‑328)	intB/insC1	pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA
	?	NC_000913	4497964 =	116 (1.160)					intergenic (+24/‑308)	intB/insC1	pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA
Rejected: Frequency below/above cutoff threshold.

TTACTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4498100‑4497944 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgggaATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATA  >  NC_000913/4497964‑4498107                                                                                                                                                                                                                                                                                                               TTACTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTT                                                                                                                                                          <  3:355669/149‑1   ACTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGC                                                                                                                                                        >  2:358807/1‑149   ACTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGC                                                                                                                                                        >  5:131603/1‑149    CTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCC                                                                                                                                                       <  1:358807/149‑1    CTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCC                                                                                                                                                       >  4:185962/1‑149     TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCTTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGa                                                                                                                                                        >  6:183718/1‑146     TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC                                                                                                                                                      >  4:274492/1‑149       TTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTTATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGG                                                                                                                                                    >  3:198537/1‑149       TTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCG                                                                                                                                                     <  8:444954/148‑1         TTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGG                                                                                                                                                   <  5:290137/148‑1          TATTGAATGTATATAAATAATGAATAACCGCGGATTCCGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTACTACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA                                                                                                                                                  <  1:391452/148‑1                                 ATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA                                                                                                                                                  >  1:307259/1‑125                                 ATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA                                                                                                                                                  <  2:307259/125‑1                                                GATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGG                                                                                                                                                   <  5:352842/109‑1                                                GATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGG                                                                                                                                                   >  6:352842/1‑109                                                                                      ATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAA                                                                                                                  >  5:301144/1‑104                                                                                      ATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAA                                                                                                                  <  6:301144/104‑1                                                                                                        TCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAAT                                                   >  8:218654/1‑149                                                                                                                                                     TGCCCGGGAATTATTATATGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTAACGCTCCCTTCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCT      <  7:111838/149‑1                                                                                                                                                      GCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCT      >  1:215392/1‑148                                                                                                                                                        CCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCA    >  5:201387/1‑148                                                                                                                                                        CCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCA    >  6:486640/1‑148                                                                                                                                                         CGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATA  <  7:316935/149‑1                                                                                                                                                         CGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCAT   >  3:72226/1‑148                                                                                                                                                                                                                                                                                                               TTACTTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4498100‑4497944 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgggaATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATA  >  NC_000913/4497964‑4498107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.