| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,002,895 | C→T | 5.2% | G238S (GGT→AGT) ‡ | fliC ← | flagellar filament structural protein (flagellin) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,002,895 | 0 | C | T | 5.2% | 308.3 / 4.5 | 96 | G238S (GGT→AGT) ‡ | fliC | flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base C (46/45); new base T (2/3); total (48/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
AACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCAAAAG > NC_000913/2002749‑2003041 | aaCAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCgg < 6:218284/149‑1 (MQ=255)aaCAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCg < 7:186395/148‑1 (MQ=255) tACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTc > 6:454330/1‑149 (MQ=255) tACCGCCTGAAGTGATAGTGGTAGCTTTAGAAGTATTTGCATCAGTTACAGTTGCATTTGCCGGTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTc < 4:19055/149‑1 (MQ=255) ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCg > 4:108174/1‑148 (MQ=255) ccGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGc < 1:293438/149‑1 (MQ=255) cGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCa < 5:454330/149‑1 (MQ=255) gCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCa > 2:390171/1‑148 (MQ=255) ccTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATa < 6:342531/149‑1 (MQ=255) gTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAAt > 1:421367/1‑148 (MQ=255) tAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTa < 2:296303/149‑1 (MQ=255) gTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTAcc < 3:188534/149‑1 (MQ=255) tGTACCTTTATTATTTATTGCAACAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCa < 7:121460/148‑1 (MQ=255) gTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCAt > 4:460166/1‑148 (MQ=255) gCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTa > 5:96284/1‑141 (MQ=255) gCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTa < 6:96284/141‑1 (MQ=255) cTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCa < 8:138050/149‑1 (MQ=255) cTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCa < 2:394990/149‑1 (MQ=255) tttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAg > 6:63954/1‑149 (MQ=255) ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATa > 3:171469/1‑128 (MQ=255) ttAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATa < 4:171469/128‑1 (MQ=255) tagtagTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGt < 2:73421/148‑1 (MQ=255) tagtagTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGt < 5:63954/148‑1 (MQ=255) tagtaTTTGCCTCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGtata > 4:132594/1‑148 (MQ=255) tttGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACAcc < 7:448637/149‑1 (MQ=255) gcagccactgatactggcggaactaacccagcttcaattgagggtgtttatactgataatggtaatgattactatgcgaaaATCACCGGTGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGa > 6:361322‑M1/82‑144 (MQ=255) gcagccactgatactggcggaactaacccagcttcaattgagggtgtttatactgataatggtaatgattactatgcgaaaATCACCGGTGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGa < 5:361322‑M1/63‑1 (MQ=255) ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTGCCATCGTTATCACCACCTGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGTAGCTggg < 1:390171/149‑1 (MQ=255) ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTggg > 1:392047/1‑149 (MQ=255) ttGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTggg > 4:165021/1‑149 (MQ=255) cATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCa < 7:118451/119‑1 (MQ=255) cATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCa > 8:118451/1‑119 (MQ=255) tttGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGt > 4:261623/1‑149 (MQ=255) tttGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGt > 5:381056/1‑149 (MQ=255) ccGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTcc < 2:421367/148‑1 (MQ=255) ccGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCg > 7:344171/1‑149 (MQ=255) cGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGc < 3:460166/149‑1 (MQ=255) gTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTAAGTTCCGc > 4:420374/1‑148 (MQ=255) ttGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGaa > 3:251691/1‑131 (MQ=255) ttGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGaa < 4:251691/131‑1 (MQ=255) ttGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAAGTGaa > 3:257945/1‑131 (MQ=255) tCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTAt > 7:48508/1‑149 (MQ=255) tCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTAt > 5:368592/1‑149 (MQ=255) cAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCa < 3:108174/149‑1 (MQ=255) gTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCtt < 3:326701/148‑1 (MQ=255) gTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCtt > 4:326701/1‑148 (MQ=255) cACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCg > 5:20945/1‑149 (MQ=255) aCTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCg > 6:149012/1‑148 (MQ=255) gTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATc < 8:13698/74‑1 (MQ=255) gTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATc > 7:13698/1‑74 (MQ=255) gTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAg > 7:438938/1‑148 (MQ=255) ccATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGaaa < 6:368592/148‑1 (MQ=255) ccATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAg > 3:372585/1‑149 (MQ=255) catcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAgg > 1:228074/1‑149 (MQ=255) atcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGTGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAggg > 3:351516/1‑149 (MQ=255) atcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAggg > 8:108073/1‑149 (MQ=255) tcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGt < 8:344171/149‑1 (MQ=255) tcatTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGt < 3:261623/149‑1 (MQ=255) ttAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAAt > 8:12744/1‑149 (MQ=255) gCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTc > 7:154351/1‑148 (MQ=255) actgataatggtaatgattactatgcgaaaATCACCGGTGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAg < 8:178182‑M1/119‑1 (MQ=255) cTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGt > 6:403080/1‑148 (MQ=255) gTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAg > 4:252570/1‑149 (MQ=255) ttACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAg < 5:403080/148‑1 (MQ=255) cTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCAtt < 6:470082/55‑1 (MQ=255) cTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCAtt > 5:470082/1‑55 (MQ=255) tGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTaa > 3:313745/1‑149 (MQ=255) cGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAata < 8:438938/149‑1 (MQ=255) cGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAata < 2:392047/149‑1 (MQ=255) gTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAGGTTTAatat > 6:145651/1‑149 (MQ=255) tAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAtt < 6:20945/149‑1 (MQ=255) aaTACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGGATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGGTTAATAttg > 3:316094/1‑149 (MQ=255) aTACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgt < 6:165225/149‑1 (MQ=255) aTACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgt < 3:252570/149‑1 (MQ=255) tACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgtt < 4:372585/149‑1 (MQ=255) attactatgcgaaaATCACCGGTGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgt > 7:178182‑M1/15‑148 (MQ=255) ttCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGc > 4:445368/1‑77 (MQ=255) ttCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGc < 3:445368/77‑1 (MQ=255) ttCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgtttgt > 5:485195/1‑149 (MQ=255) ttCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgtttgt > 7:301044/1‑149 (MQ=255) cccATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTtgtg < 8:48508/148‑1 (MQ=255) cATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACCCCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTgtggtg > 3:22984/1‑149 (MQ=255) cATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTgtggtg > 5:291533/1‑149 (MQ=255) aTCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGtggtgg < 6:381056/149‑1 (MQ=255) aTCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGtggtgg < 2:228074/149‑1 (MQ=255) aTCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGtggtgg > 3:148792/1‑149 (MQ=255) gTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTa < 8:154351/148‑1 (MQ=255) ttATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGTGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGc < 4:351516/149‑1 (MQ=255) tATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCa > 6:326253/1‑149 (MQ=255) TCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCAcc > 4:407623‑M1/1‑149 (MQ=255) TCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTACCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCAc < 7:67032‑M1/148‑1 (MQ=255) ACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCa < 8:380306‑M1/148‑1 (MQ=255) CACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCaaaa > 3:132594‑M1/1‑149 (MQ=255) CACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCaa < 6:323320‑M1/147‑1 (MQ=255) CACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCaa < 2:113623‑M1/147‑1 (MQ=255) cGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgtt < 3:395230/127‑1 (MQ=255) cGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATAttgtt > 4:395230/1‑127 (MQ=255) cGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCaaaa > 3:275637/1‑146 (MQ=255) cGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCaaaa < 4:275637/146‑1 (MQ=255) cGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCAGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCAAAAg > 1:230446/1‑147 (MQ=255) | AACAGGTGTACCGCCTGAAGTGATAGTTGTAGCTTTAGTAGTATTTGCATCAGTTACAGTTGCATTTGCCGTTGCTCCAGTCGCCATTGTCACTGTACCATCATTAGCAACTGTTACTGCGTAATACTTCCCATCGTTATCACCACCGGTGATTTTCGCATAGTAATCATTACCATTATCAGTATAAACACCCTCAATTGAAGCTGGGTTAGTTCCGCCAGTATCAGTGGCTGCTTCCGTAGAAAGGGTAATTCCAGTAAGTTTAATATTGTTTGTGGTGGTAGCACCAAAAG > NC_000913/2002749‑2003041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |