New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3676971 =	12 (0.150)	3 (0.040)	3/238	NT	22.8%	coding (1380/2061 nt)	yhjG	putative inner membrane‑anchored periplasmic AsmA family protein
	?	NC_000913	3677025 =	9 (0.120)					coding (1326/2061 nt)	yhjG	putative inner membrane‑anchored periplasmic AsmA family protein

GGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCC  >  NC_000913/3676879‑3677163                                                                                                                                                   |                                                                                                                                           ggCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCAttttt                                                                                                                                          >  7:206465/1‑149 (MQ=255)   cATCAGTTCTTTCAGTTTCGGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGa                                                                                                                                        <  3:19461/149‑1 (MQ=255)    tggatgccgatgttcgcttcaaagggcggcgcattgagcatggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGa                                                                                                                                        >  6:6963‑M1/90‑148 (MQ=255)                                ccTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATc                                                                                                           <  8:206465/149‑1 (MQ=255)                                  tGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCt                                                                                                               <  3:216963/143‑1 (MQ=255)                                  tGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCt                                                                                                               >  4:216963/1‑143 (MQ=255)                                          catggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGatat                                                                                                                               <  7:63157‑M1/68‑1 (MQ=255)                                          catggcagtagcctgccgattagcgatctttctactcatatcatcctcaaaAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGatat                                                                                                                               >  8:63157‑M1/52‑119 (MQ=255)                                             ccgcccCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGc                                                                                              <  4:130029/149‑1 (MQ=255)                                                                              aTGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACAt                                                             >  7:382473/1‑149 (MQ=255)                                                                               atatcatcctcaaaaatgctgacctgcgcctgcaaccgctgaaatttggcatggcgggcggcagcattTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATg                                                                                          <  7:63157‑M2/51‑1 (MQ=255)                                                                               atatcatcctcaaaaatgctgacctgcgcctgcaaccgctgaaatttggcatggcgggcggcagcattTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATg                                                                                          >  8:63157‑M2/69‑119 (MQ=255)                                                                                        tcaaaaatgctgacctgcgcctgcaaccgctgaaatttggcatggcgggcggcagcattTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCa                                                    >  6:6963‑M2/60‑148 (MQ=255)                                                                                                               gCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCg                             >  4:297181/1‑148 (MQ=255)                                                                                                                                gCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGgcag            <  3:297181/148‑1 (MQ=255)                                                                                                                                    gcgcAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAAc                                                >  7:101862/1‑108 (MQ=255)                                                                                                                                    gcgcAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAAc                                                <  8:101862/108‑1 (MQ=255)                                                                                                                                         ggTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGccc  <  8:382473/149‑1 (MQ=255)                                                                                                                                             agcattTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATaa                 <  7:151138‑M2/124‑1 (MQ=255)                                                                                                                                             agcattTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATaa                 >  8:151138‑M2/7‑130 (MQ=255)                                                                                                                                                   |                                                                                                                                           GGCATCAGTTCTTTCAGTTTCAGTCGACGAGCCTGAATATCTGCCCGCCCCTGCATCGGCTTTTTATCGCCTTCCAGATGAATATTCGCCGCAATGCTGCCGCCCGCCATGCCAAATTTCAGCGGTTGCAGGCGCAGGTCAGCATTTTTGAGGATGATATGAGTAGAAAGATCGCTAATCGGCAGGCTACTGCCATGCTCAATGCGCCGCCCTTTGAAGCGAACATCGGCATCCATAACGTCCCATTTATCGGTTTCGAAGCGGTCATAAGGCAGCACTTTGCCC  >  NC_000913/3676879‑3677163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.