New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2871564 =23 (0.740)5 (0.170) 5/228 3.1 16.5% coding (217/480 nt) ispF 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
?NC_000913 2871614 = 29 (0.990)coding (167/480 nt) ispF 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGGCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAATG  >  NC_000913/2871458‑2871709
                                                                                                          |                                                                                                                                                 
tgCGGCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTACGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCt                                                                                                          <  1:86040/148‑1 (MQ=255)
   ggCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGcc                                                                                                      >  6:34611/1‑149 (MQ=255)
                               tAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGc                                                                          <  6:92502/149‑1 (MQ=255)
                                  tGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGata                                                                                                  <  3:91763/122‑1 (MQ=255)
                                  tGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGata                                                                                                  >  4:91763/1‑122 (MQ=255)
                                      aTCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTaaa                                                                                                                                    <  6:77486/84‑1 (MQ=255)
                                      aTCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTaaa                                                                                                                                    >  5:77486/1‑84 (MQ=255)
                                      aTCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGAACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCAt                                                                   >  8:40803/1‑149 (MQ=255)
                                       tCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATc                                                                                                                           >  2:173278/1‑92 (MQ=255)
                                       tCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATc                                                                  >  8:135732/1‑149 (MQ=255)
                                                  aaGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCAt                                                       >  3:98976/1‑149 (MQ=255)
                                                          aaCCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAgcgc                                                >  1:133850/1‑148 (MQ=255)
                                                                    cTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa                                                                        >  7:105566/1‑114 (MQ=255)
                                                                    cTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCaa                                                                        <  8:105566/114‑1 (MQ=255)
                                                                      gAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCa                                   <  4:98976/149‑1 (MQ=255)
                                                                       aaTACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGat                                                                                                   <  8:90280/84‑1 (MQ=255)
                                                                       aaTACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGat                                                                                                   >  7:90280/1‑84 (MQ=255)
                                                                                ccAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCa                         <  7:135732/149‑1 (MQ=255)
                                                                                    gCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCaa                     <  5:34611/149‑1 (MQ=255)
                                                                                      ttCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCa                                              >  2:61553/1‑122 (MQ=255)
                                                                                              gcagcTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTc            <  2:133850/148‑1 (MQ=255)
                                                                                                      cgGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCTCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAAt   <  7:40803/149‑1 (MQ=255)
                                                                                                       ggCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAATg  >  1:1902/1‑149 (MQ=255)
                                                                                                          tATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAAt   >  6:90339/1‑145 (MQ=255)
                                                                                                          tATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAAt   <  5:90339/145‑1 (MQ=255)
                                                                                                          |                                                                                                                                                 
TGCGGCAACATCTTCGGTGCCTGAGCGATGATAGTGACATCGACGTTGCCAAGGGTATAACCCTTCGCCTGAATACGACGCCAGGCTTCGCGTAGCAGCTCGCGGCTATCGGCACCTTTAAATGCCGGATCGGTATCCGGGAACAGCTTGCCGATATCCCCCAGCGCCGCCGCGCCAAGCAATGCATCGGTCAACGCATGGAGCGCCACGTCGCCATCAGAATGCGCCAGCAATCCTTTTTCGTAAGGAATG  >  NC_000913/2871458‑2871709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.