New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	79973 =	65 (0.740)	4 (0.050)	4/242	NT	6.8%	coding (892/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit
	?	NC_000913	80003 =	48 (0.580)					coding (862/1401 nt)	leuC	3‑isopropylmalate dehydratase large subunit

CATGCGCCGAAAGGCAAAGATTTCGACGACGCCGTTGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/80123‑79973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggtgaCCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTAAAGGT  >  NC_000913/80003‑80150                                                                                                                                                                                                                                                                                                             CATGCGCCGAAAGGCAAAGATTTCGACGACGCCGTTGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGT                                                                                                                                                        <  6:200725/149‑1              GCAAAGATTTCGACGACGCCGTTGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGT                                                                                                                                                        >  1:319951/1‑136              GCAAAGATTTCGACGACGCCGTTGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGT                                                                                                                                                        <  2:319951/136‑1                                    TGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCA                                                                                                                                                           <  6:302795/111‑1                                    TGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCA                                                                                                                                                           >  5:302795/1‑111                                             GAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGT                                                                                                                                                        <  1:274884/105‑1                                             GAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGT                                                                                                                                                        >  2:274884/1‑105                                                                      GCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAG                                                                                                                                                          >  1:256498/1‑78                                                                      GCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAG                                                                                                                                                          <  2:256498/78‑1                                                                                                                   CCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCA                                                                       <  3:291275/116‑1                                                                                                                   CCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCA                                                                       >  4:291275/1‑116                                                                                                                          TCACCTGGGGCACCAATCCCGGCCAGGTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGG                                                                               <  8:124289/101‑1                                                                                                                          TCACCTGGGGCACCAATCCCGGCCAGGTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGG                                                                               >  7:124289/1‑101                                                                                                                                                CCAGGTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGT         >  1:385126/1‑149                                                                                                                                                   GGTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTAA      <  7:206942/149‑1                                                                                                                                                    GTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTAAA     <  7:82060/149‑1                                                                                                                                                    GTGACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTA       >  8:82060/1‑147                                                                                                                                                       ACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTAAAGGT  <  3:324891/149‑1                                                                                                                                                       ACCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTAAAGGT  <  1:380148/149‑1                                                                                                                                                                                                                                                                                                             CATGCGCCGAAAGGCAAAGATTTCGACGACGCCGTTGCCTACTGGAAAACCCTGCAAACCGACGAAGGCGCAACTTTCGATACCGTTGTCACTCTGCAAGCAGAAGAAATTTCACCGCAGGTCACCTGGGGCACCAATCCCGGCCAGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/80123‑79973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggtgaCCTGCGGTGAAATTTCTTCTGCTTGCAGAGTGACAACGGTATCGAAAGTTGCGCCTTCGTCGGTTTGCAGGGTTTTCCAGTAGGCAACGGCGTCGTCGAAATCTTTGCCTTTCGGCGCATGCAGACGGCCTTTGACATAGTTAAAGGT  >  NC_000913/80003‑80150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.