New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1259097	50 (0.920)	3 (0.060)	3/240	NT	6.0%	intergenic (+28/+27)	ychH/dauA	DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter
	?	NC_000913	= 1259103	49 (0.990)					intergenic (+34/+21)	ychH/dauA	DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter

TCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1258942‑1259097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccagtcagCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTTCATGCCCGCCAACACGGGCACCCGCCAGCCA  <  NC_000913/1259103‑1258959                                                                                                                                                                                                                                                                                                               TCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGA                                                                                                                                                           <  6:54485/148‑1     CGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATACTGCAGTTTGCTGACCAGg                                                                                                                                                      <  4:157341/149‑2                         CGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAGCGCAAACTGACTGGTCA                                                                                                                                  <  5:124607/149‑1                                                                       GTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCA                                                                                                                                                        <  5:9969/81‑1                                                                       GTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCA                                                                                                                                                        >  6:9969/1‑81                                                                                                                             CTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACCCCTGTTCAg                              >  7:46917/1‑148                                                                                                                             CTAACAAATAATGCAGTTTGCTGACCAGTCAGTTTGCGCTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTT                                 <  8:46917/146‑1                                                                                                                                            cgagcgTGACCAGTCAGCGCAAACTGACTGGTCAGCAAACTGCAGTCTTTGTTAGCTCTGACGGCGATTATCGCTACGCCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTTCATGCCCGCCAACACGG                <  6:93752/142‑1                                                                                                                                                  TGACCAGTCAGCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCACCGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTTCATGCCCGCCAACACGGGCACCCG         >  6:115095/1‑149                                                                                                                                                       AGTCAGCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGG                                              <  5:63114/107‑1                                                                                                                                                       AGTCAGCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGG                                              >  6:63114/1‑107                                                                                                                                                        GTCAGCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTTCATGCCCGCCAACACGGGCACCCGCCAGCC   <  8:12801/149‑1                                                                                                                                                           AGCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTTAATGCCCGCCAACACGGGCACCCGCCAGCCA  >  7:100883/1‑147                                                                                                                                                                                                                                                                                                               TCGTCGGTGCCATTCTCTGGCTGGCGGGTGCCCGTGTTGGCGGGCATGAACAGGTGTGCGACCGTTACTGGTGGGTTCGCCACTATGACAAACGTTGCCGCCGTAGCGATAATCGCCGTCATAGCTAACAAATAATGCAGTTTGCTGACCAGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1258942‑1259097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccagtcagCGCAAACTGACTGGTCAGCAAACTGCATTATTTGTTAGCTATGACGGCGATTATCGCTACGGCGGCAACGTTTGTCATAGTGGCGAACCCACCAGTAACGGTCGCACACCTGTTCATGCCCGCCAACACGGGCACCCGCCAGCCA  <  NC_000913/1259103‑1258959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.