New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2770504 =	57 (1.050)	3 (0.060)	3/250	NT	4.9%	coding (60/237 nt)	ypjK	CP4‑57 prophage; putative inner membrane protein
	?	NC_000913	2770534 =	61 (1.180)					coding (90/237 nt)	ypjK	CP4‑57 prophage; putative inner membrane protein
Rejected: Frequency below/above cutoff threshold.

AACCACTTTGGCAAAGACATAAATTCCCACAAAAATACCCACCGGCACGCCGACGAACGGCGTCAGCGCGACACTGGCAGCACCGGCTGCACCACCTCCCGTCAGTAGTGCGGCAACGGTTGCAAGTGTCAGGGCCGTGAGGCTGTCGGACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2770657‑2770504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGGGAAAAAATAA  >  NC_000913/2770534‑2770681                                                                                                                                                                                                                                                                                                                AACCACTTTGGCAAAGACATAAATTCCCACAAAAATACCCACCGGCACGCCGACGAACGGCGTCAGCGCGACACTGGCAGCACCGGCTGCACCACCTCCCGTCAGTAGTGCGGCAACGGTTGCAAGTGTCAGGGCCGTGAGGCTGTCGG                                                                                                                                                           >  5:138675/1‑149     ACTTTGGCAAAGACATAAATTCCCACAAAAATACCCACCGGCACGCCGACGAACGGCGTCAGCGCGACACTGGCAGCACCGGCTGCACCACCTCCCGTCAGTAGTGCGGCAACGGTTGCAAGTGTCAGGGCCGTGAGGCTGTCGGACAC                                                                                                                                                       >  2:53732/1‑149                                                                                                                       GTTGCAAGTGTCAGGGCCGTGAGGCTGTCGGACACTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTG                                     >  4:129474/1‑149                                                                                                                           CAAGTGTCAGGGCCGTGAGGCTGTCGGACACTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGT                                                                              >  1:105486/1‑104                                                                                                                           CAAGTGTCAGGGCCGTGAGGCTGTCGGACACTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGT                                                                              <  2:105486/104‑1                                                                                                                                                        ACTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGTCGTGCCGGTGGGTATTTTTGGGGGGATGTATTTCGGGGCCAAAGTGGGTCGTCTGATTTCATGGAAAAAA     >  3:37582/1‑148                                                                                                                                                         CTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGG            <  5:86228/140‑1                                                                                                                                                         CTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGG            >  6:86228/1‑140                                                                                                                                                          TTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGGGAAAAAATAA  >  3:166347/1‑149                                                                                                                                                          TTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGGGAAAAAATAA  >  5:95538/1‑149                                                                                                                                                                                                                                                                                                                AACCACTTTGGCAAAGACATAAATTCCCACAAAAATACCCACCGGCACGCCGACGAACGGCGTCAGCGCGACACTGGCAGCACCGGCTGCACCACCTCCCGTCAGTAGTGCGGCAACGGTTGCAAGTGTCAGGGCCGTGAGGCTGTCGGACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2770657‑2770504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacactTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGGGAAAAAATAA  >  NC_000913/2770534‑2770681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.