New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3099660	58 (1.070)	3 (0.060)	3/248	NT	5.0%	intergenic (‑95/+22)	yggM/ansB	DUF1202 family putative secreted protein/periplasmic L‑asparaginase 2
	?	NC_000913	= 3099667	59 (1.150)					intergenic (‑102/+15)	yggM/ansB	DUF1202 family putative secreted protein/periplasmic L‑asparaginase 2

CCAGGCATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3099506‑3099660 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccggTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTTGATGA  <  NC_000913/3099667‑3099520                                                                                                                                                                                                                                                                                                                 CCAGGCATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAG                                                                                                                                                            >  2:65769/1‑149  CAGGCATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGC                                                                                                                                                           >  8:126486/1‑149   AGGCATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCC                                                                                                                                                          >  6:86584/1‑149   AGGCATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCC                                                                                                                                                          <  2:205575/149‑1     GCATTACCAGTCATCAACATAAGCAGTGCCTTGCCAACTATCCTTTGCTTTTTCACCCGAAAAACCTCACGCGGATTAATTTATTCCGGTTATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCCCC                                                                                                                                                        <  7:54277/149‑1      CATTACCAGTCATCAACATAAGGAGTTCCGTGCAAAAATTCCTTTGCTTTTTCACCGGAAAAAACTCACGCGGAATAATTTATTCCGGTGATTATCATTCGGGAAATTAAAATTGGGAATTGACGTGAGTCTGAAGTGAAAAAGCCCCG                                                                                                                                                       <  5:107608/149‑1       ATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTTTAATTAGGGTAATTAAAATTGGCAATGGAAGTGAGTCTGAAGTTAAAAAGacaagg                                                                                                                                                      >  1:235767/1‑143       ATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCCCCGG                                                                                                                                                      >  2:128274/1‑149                    AACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCC                                                                                                                                                          <  6:114924/132‑1                    AACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCC                                                                                                                                                          >  5:114924/1‑132                          AGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCCCCGGTATCGTGCCGGGGCTTTT                                                                                                                                    <  3:3031/148‑1                                                                                                                                          GAAGTGAAAAAGCCCCGGCACGATACCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGG                                               <  4:131364/121‑1                                                                                                                                          GAAGTGAAAAAGCCCCGGCACGATACCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGG                                               >  3:131364/1‑121                                                                                                                                                     GCCCCGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGT        >  4:65646/1‑149                                                                                                                                                     GCCCCGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGT        >  4:62535/1‑149                                                                                                                                                     GCCCCGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGT        >  1:128274/1‑149                                                                                                                                                      CCCCGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTT       <  1:229405/149‑1                                                                                                                                                        CCGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTTGA     >  5:90461/1‑149                                                                                                                                                        CCGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTTGA     <  7:117788/149‑1                                                                                                                                                         CGGTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTTGAT    <  1:107676/149‑1                                                                                                                                                           GTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTTGATGA  <  1:178992/149‑1                                                                                                                                                                                                                                                                                                                 CCAGGCATTACCAGTCATCAACATAAGCAGTGCCGTGCCAACAATCCATTGCTTTTTCACCCGAAAAACCTCACGCGGAATAATTTATTCCGGTGATTATCATTAGGGTAATTAAAATTGGCAATGGACGTGAGTCTGAAGTGAAAAAGCCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3099506‑3099660 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccggTATCGTGCCGGGGCTTTTTCACTTCAGACTCACGTCCATTGCCAATTTTAATTACCCTAATGATAATCACCGGAATAAATTATTCCGCGTGAGGTTTTTCGGGTGAAAAAGCAATGGATTGTTGGCACGGCACTGCTTATGTTGATGA  <  NC_000913/3099667‑3099520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.