New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3798233	81 (1.500)	2 (0.040)	5/236	NT	2.6%	intergenic (+26/+6)	waaL/waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
	?	NC_000913	= 3798235	75 (1.540)					intergenic (+28/+4)	waaL/waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
Rejected: Frequency below/above cutoff threshold.

TATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3798077‑3798233 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagaagtgagttTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGATCACATCACTGAGTCCAATCCCCAC  <  NC_000913/3798235‑3798094                                                                                                                                                                                                                                                                                                             TATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAG                                                                                                                                                         <  7:92746/148‑1     AACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGT                                                                                                                                                     >  2:116258/1‑148      ACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAGGAAGTGA                                                                                                                                                   <  5:194222/149‑1      ACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGA                                                                                                                                                   <  8:176525/149‑1                                                                                                         AATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAA                                                                                       >  7:61090/1‑110                                                                                                         AATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAA                                                                                       <  8:61090/110‑1                                                                                                                                                  AAGAAGTGAGTTAAAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGATGCGTGACAATATGATCACATCACTGAGTCCAATC       >  8:99681/1‑149                                                                                                                                                   AGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTAATCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGAT                          <  3:204525/129‑1                                                                                                                                                   AGAAGTGAGTTTTAACTCACTTCTTAAACTTGTTTAATCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGAT                          >  4:204525/1‑129                                                                                                                                                    GAAGTGAGTTAAAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGATCACATCACTGAGTCCAATCCC     <  7:246228/149‑1                                                                                                                                                    GAAGTGAGTTAAAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGATCACATCACTGAGTCCAATCCC     >  8:246228/1‑149                                                                                                                                                        TGAGTTTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGATCACATCACTGAGTCCAATCCCCAC  >  8:126823/1‑148                                                                                                                                                                                                                                                                                                             TATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3798077‑3798233 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagaagtgagttTTAACTCACTTCTTAAACTTGTTTATTCTTAATTAATTGTATTGTTACGATTATTAATGACGAGTAAGAGGACTATAGCGGATATAATGATAATTGGAATGCTGCGTGCCCATATGATCACATCACTGAGTCCAATCCCCAC  <  NC_000913/3798235‑3798094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.