New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3613251 =	52 (0.960)	3 (0.060)	3/262	NT	5.3%	coding (283/588 nt)	acpT	4'‑phosphopantetheinyl transferase
	?	NC_000913	3613287 =	55 (1.020)					coding (319/588 nt)	acpT	4'‑phosphopantetheinyl transferase

CCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGACGCGCAAAGAAGCCATCGTTAA  >  NC_000913/3613106‑3613390                                                                                                                                                  |                                                                                                                                              cccGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTc                                                                                                                                            >  1:52941/1‑149 (MQ=255)          ggAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCcgc‑‑gcg                                                                                                                                 >  3:102618/1‑149 (MQ=255)           gagaTCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCgc‑‑gcgc                                                                                                                                >  3:61594/1‑149 (MQ=255)               atttgccaggcgctgccgccacgctgtttaacgatggcttctttgcgcgtccagatgcgccagaacatttccagttgctgatcaggatgcacggcgtccatctcagcgtgttccccgaggctgaatacggcGTTCGCCCGC‑‑GCGCCAAc                                                                                                                            >  3:219758‑M1/132‑149 (MQ=255)                       ggCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCgctg                                                                                                                    >  8:244001/1‑149 (MQ=255)                          gAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCgctggct                                                                                                                 >  3:176982/1‑149 (MQ=255)                           aaCAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCgctggctg                                                                                                                <  3:16842/149‑1 (MQ=255)                              aaGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCtggctggc                                                                                                              >  7:159603/1‑148 (MQ=255)                                       cTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTa                                                                                                    >  7:42454/1‑149 (MQ=255)                                       cTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTa                                                                                                    <  6:218056/149‑1 (MQ=255)                                        tGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTAt                                                                                                   >  5:74791/1‑149 (MQ=255)                                         gCATTTGCGCCGGAAATGTCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTAtt                                                                                                  >  7:169342/1‑149 (MQ=255)                                           aTTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCa                                                                                                <  2:38977/149‑1 (MQ=255)                                           aTTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCa                                                                                                <  2:38979/149‑1 (MQ=255)                                                  ccGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCgg                                                                                         <  4:61594/149‑1 (MQ=255)                                                   cGGAAATGCCGCTATGGTGCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCggg                                                                                        <  5:107952/149‑1 (MQ=255)                                                      aaaTGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGaa                                                                                     <  6:74791/149‑1 (MQ=255)                                                               tATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCt                                                                               >  1:98566/1‑146 (MQ=255)                                                               tATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCt                                                                               >  8:123536/1‑146 (MQ=255)                                                                 tGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAAAGCCGTATTCAGCCTCGGGGAACACGCTgaga                                                                           <  1:97115/148‑1 (MQ=255)                                                                    ttCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCa                                                                                                <  7:137723/124‑1 (MQ=255)                                                                    ttCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCa                                                                                                >  8:137723/1‑124 (MQ=255)                                                                    ttCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGa                                                                       >  6:17813/1‑149 (MQ=255)                                                                        aCTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGcc                                                                   >  1:160246/1‑149 (MQ=255)                                                                         cTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCg                                                                  >  8:233326/1‑149 (MQ=255)                                                                            aaGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGt                                                                 <  4:55285/147‑1 (MQ=255)                                                                            aaGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCGGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGt                                                                 <  3:17406/147‑1 (MQ=255)                                                                               ccATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATc                                                            >  7:202531/1‑149 (MQ=255)                                                                                cATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCt                                                                               <  7:223628/129‑1 (MQ=255)                                                                                cATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCt                                                                               >  8:223628/1‑129 (MQ=255)                                                                                 aTAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCt                                                          >  3:133656/1‑149 (MQ=255)                                                                                    gCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGAt                                                       <  2:52941/149‑1 (MQ=255)                                                                                         gACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGc                                                   >  1:33853/1‑148 (MQ=255)                                                                                          aCGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCaa                                                 >  8:33510/1‑149 (MQ=255)                                                                                            gATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCTCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCg                                                                                          >  5:69635/1‑106 (MQ=255)                                                                                            gATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCg                                                                                          <  6:69635/106‑1 (MQ=255)                                                                                                   cccTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATg                                        <  8:169342/149‑1 (MQ=255)                                                                                                       gctgTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCt                                    >  8:180728/1‑149 (MQ=255)                                                                                                        ctgTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCt                                    <  8:42454/148‑1 (MQ=255)                                                                                                        ctgTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCt                                    <  4:176982/148‑1 (MQ=255)                                                                                                         tgTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTgg                                  >  6:79242/1‑149 (MQ=255)                                                                                                             gAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCa                              >  6:88544/1‑149 (MQ=255)                                                                                                             gAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCa                              >  4:202171/1‑149 (MQ=255)                                                                                                                tgatgaAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCt                           <  7:244001/149‑1 (MQ=255)                                                                                                                  atgaAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTg                          >  3:163084/1‑148 (MQ=255)                                                                                                                     aaGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGAcg                      <  2:160246/149‑1 (MQ=255)                                                                                                                       ggCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGAcgcg                    >  2:229188/1‑149 (MQ=255)                                                                                                                           aaGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGACGCGCaaa                <  5:17813/149‑1 (MQ=255)                                                                                                                           aaGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGACGCGCaaa                <  7:123536/149‑1 (MQ=255)                                                                                                                                ggCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGACGCGCAaagaag            <  1:229188/148‑1 (MQ=255)                                                                                                                                 ccgaggctgaatacggcGTTCGCCAGCCAGCGCCAGTTGGCGC‑‑GCGGGCGAATGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGAcgcg                    >  4:120810‑M1/18‑139 (MQ=255)                                                                                                                                 ccgaggctgaatacggcGTTCGCCAGCCAGCGCCAGTTGGCGC‑‑GCGGGCGAATGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGAcgcg                    <  3:120810‑M1/122‑1 (MQ=255)                                                                                                                                      gATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTga                                                                             <  4:76305/77‑1 (MQ=255)                                                                                                                                      gATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTga                                                                             >  3:76305/1‑77 (MQ=255)                                                                                                                                      gATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCAGCTGGACGCGCAAAGAAGCCATCGt     >  6:26810/1‑149 (MQ=255)                                                                                                                                          tCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGACGCGCAAAGAAGCCATCGTTaa  <  8:159603/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              CCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAAGTGATTCGCCCGC‑‑GCGCCAACTGGCGCTGGCTGGCGAACGCCGTATTCAGCCTCGGGGAACACGCTGAGATGGACGCCGTGCATCCTGATCAGCAACTGGAAATGTTCTGGCGCATCTGGACGCGCAAAGAAGCCATCGTTAA  >  NC_000913/3613106‑3613390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.