New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1497378 =	50 (0.920)	4 (0.080)	3/248	NT	8.4%	coding (523/1656 nt)	opgD	OPG biosynthetic periplasmic protein
	?	NC_000913	1497422 =	40 (0.780)					coding (567/1656 nt)	opgD	OPG biosynthetic periplasmic protein

ACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGC  >  NC_000913/1497277‑1497568                                                                                                                                                  |                                                                                                                                                   aCGATGCATGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGATATTTCCGCGCCGTTGATGATACatat                                                                                                                                                 <  6:222965/149‑1 (MQ=255) aCGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACata                                                                                                                                                  >  7:71797/1‑148 (MQ=255)               gATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATATATATCAATACGGTTTGTc                                                                                                                                   >  5:64707/1‑149 (MQ=255)                aaaCAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGATTTCGCCTGTTTAAATCACACGAACTCGAGCCCCGTCATGTAGAATCATTACTCGGCGCGAGATATTACCGAGCCTTTGAAGATACATATCAATACGGATTGTCg                                                                                                                                  >  8:54260/3‑149 (MQ=255)                  aCAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGt                                                                                                                                    >  8:4665/1‑145 (MQ=255)                  aCAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGt                                                                                                                                    <  7:4665/145‑1 (MQ=255)                    aaaaCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCa                                                                                                                                               <  1:209577/132‑1 (MQ=255)                    aaaaCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCa                                                                                                                                               >  2:209577/1‑132 (MQ=255)                    aaaaCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGGTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGTTTTGTCGGccc                                                                                                                              >  3:68642/1‑149 (MQ=255)                       aCAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCcgcg                                                                                                                           <  3:213068/149‑1 (MQ=255)                         aaTTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGc                                                                                                                         >  6:35010/1‑149 (MQ=255)                         aaTTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGGTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGc                                                                                                                         <  4:68642/149‑1 (MQ=255)                           ttAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCt                                                                                                                       <  2:60817/149‑1 (MQ=255)                              gAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGc                                                                                                                    >  8:71732/1‑149 (MQ=255)                              gAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGc                                                                                                                    <  8:12729/149‑1 (MQ=255)                               aaGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGc                                                                                                                    >  8:109669/1‑148 (MQ=255)                                              tcGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACAcc                                                                                                    >  3:176183/1‑149 (MQ=255)                                                ggCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATATATATCAATACGGTTTGTCGGCCCGGGGCCTGGCGATCGACACTTACAcc                                                                                                    <  6:64707/147‑1 (MQ=255)                                                ggCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACAcc                                                                                                    <  7:239678/147‑1 (MQ=255)                                                ggCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGa                                                                                                  >  1:154208/1‑149 (MQ=255)                                                   tttGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAg                                                                                               >  7:17570/1‑149 (MQ=255)                                                     tGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGt                                                                                              <  8:17570/148‑1 (MQ=255)                                                                gcgTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGtt                                                                                   <  4:20671/148‑1 (MQ=255)                                                                     tttAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGa                                                                             >  7:203462/1‑149 (MQ=255)                                                                            cccccGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTAcc                                                                      <  4:118079/149‑1 (MQ=255)                                                                            cccccGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTAcc                                                                      >  1:159617/1‑149 (MQ=255)                                                                              accGAACTGGCGCGCCGTGATGTAGTATAATTTCTCGGCGCGAGTTATTTCCGCGACGTTGATGATACATATCAATACGGTTTGTCGGCCCGCCGCCTGGCGATCGACACTGACACCGACAGAAAAGAAGAGTTCCCCGACTTTACCGc                                                                    >  4:136689/2‑149 (MQ=255)                                                                                       gcgcgcCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGt                                                            <  7:71732/148‑1 (MQ=255)                                                                                         gcgcCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACat                                                                                                                                                   >  3:167751/1‑59 (MQ=255)                                                                                         gcgcCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACat                                                                                                                                                   <  4:167751/59‑1 (MQ=255)                                                                                                   gtagtaTCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTaa                                                >  5:205532/1‑148 (MQ=255)                                                                                                     agtaTCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAAc                                             >  2:146991/1‑149 (MQ=255)                                                                                                         gCATTTCTCGGCGCGAGTTATTTCCTCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGGTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCgg                                          >  2:202794‑M1/2‑148 (MQ=255)                                                                                                           ATTTCTCGCCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCggggg                                       <  2:211614‑M1/149‑1 (MQ=255)                                                                                                            tcaacggcgcggaaataactcgcgccgagaaatgatacATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCgg                                          >  1:179969‑M2/39‑145 (MQ=255)                                                                                                            tcaacggcgcggaaataactcgcgccgagaaatgatacATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCgg                                          <  2:179969‑M2/107‑1 (MQ=255)                                                                                                            TTTCTCGGAGCGAGTTATTTCCGCGCCGTTGATGATACATATAAATCCGGTTTGTCGGCCCGCGGCCTGGCGCTCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGc                                      >  3:136689‑M1/1‑149 (MQ=255)                                                                                                               aacggcgcggaaataactcgcgccgttgatgatacATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAAc                                   >  1:15123‑M2/36‑149 (MQ=255)                                                                                                                tcGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAACACCGGGGGCAAc                                   >  2:159605/1‑148 (MQ=255)                                                                                                                tcGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAAc                                   >  2:248922/1‑148 (MQ=255)                                                                                                                tcGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCACCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAAc                                   >  6:209878/1‑148 (MQ=255)                                                                                                                acggcgcggaaataactcgcgccgttgaggagacATATCAATACGGTTTGTCGGCCCGCGGCCTCGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAAc                                   >  6:90676‑M2/35‑148 (MQ=255)                                                                                                                     gcgAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAAc                                             <  6:238334/133‑1 (MQ=255)                                                                                                                     gcgAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAAc                                             >  5:238334/1‑133 (MQ=255)                                                                                                                       gAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACAGGGGGCAACTACCTTTa                           >  6:220012/1‑149 (MQ=255)                                                                                                                            aTTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATa                                                      <  4:39838/117‑1 (MQ=255)                                                                                                                            aTTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTAACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATa                                                      <  8:223350/117‑1 (MQ=255)                                                                                                                             tttCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGtt                      >  7:89727/1‑148 (MQ=255)                                                                                                                               tCCGCGCCGTTGATGATACATATCAATACGGATTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTa                    <  4:176183/148‑1 (MQ=255)                                                                                                                               tCCGCGCCGTTGATGACACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTAt                   >  6:70935/1‑149 (MQ=255)                                                                                                                                 cgcgCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATg                  <  7:109669/148‑1 (MQ=255)                                                                                                                                        ttGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTc          >  8:162692/1‑149 (MQ=255)                                                                                                                                               tacATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAgcg   >  3:90483‑M2/4‑149 (MQ=255)                                                                                                                                                acATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTc          <  8:202490‑M2/139‑1 (MQ=255)                                                                                                                                                acATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTc          >  7:202490‑M2/3‑141 (MQ=255)                                                                                                                                                  atatCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTa                                                                        <  3:139090/77‑1 (MQ=255)                                                                                                                                                  atatCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTa                                                                        >  4:139090/1‑77 (MQ=255)                                                                                                                                                  atatCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAACACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAgcgc  >  6:150130/1‑147 (MQ=255)                                                                                                                                                  |                                                                                                                                                   ACGATGCAGGTGTTGATACAAAACAATTAGAAGGGCAAAGCGATCTCGGCTTTGCCGGTTTTCGCGTGTTTAAAGCCCCCGAACTGGCGCGCCGTGATGTAGTATCATTTCTCGGCGCGAGTTATTTCCGCGCCGTTGATGATACATATCAATACGGTTTGTCGGCCCGCGGCCTGGCGATCGACACTTACACCGACAGTAAAGAAGAGTTCCCCGACTTTACCGCCTTCTGGTTTGATACGGTAAAACCGGGGGCAACTACCTTTACCGTTTATGCGTTGCTCGATAGCGC  >  NC_000913/1497277‑1497568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.