New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1932093NA (NA)5 (0.060) 5/252 10.2 NA noncoding (8/19 nt) REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1932096 NA (NA)noncoding (11/19 nt) REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

ATTTGGTAAGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1931936‑1932093
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaatgcccgatcGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATGGCGTCAACAACACTCTCTGCAGTA  <  NC_000913/1932096‑1931987
                                                                                                                                                                                                                                                                            
ATTTGGTAAGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAA                                                                                                                         >  5:58647/1‑149
    GGTAAGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGTCGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGC                                                                                                                      <  6:348251/148‑1
    GGTAAGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGCCGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCC                                                                                                                     >  7:137442/1‑149
    GGTAAGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGC                                                                                                                      <  8:215016/148‑1
        AGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGAT                                                                                                                 <  1:166108/149‑1
         GCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATC                                                                                                                <  4:334168/149‑1
         GCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATC                                                                                                                <  5:296553/149‑1
                       GCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGC                                                                                                                      >  8:110864/1‑129
                       GCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGC                                                                                                                      <  7:110864/129‑1
                                                        CAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCT                                                                   >  1:351860/1‑147
                                                        CAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCT                                                                   <  2:351860/147‑1
                                                         AGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCTGTA                                                                >  3:85188/1‑149
                                                                        CGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCTGTACTTTTAC                                                         <  4:116048/141‑1
                                                                        CGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCTGTACTTTTAC                                                         >  3:116048/1‑141
                                                                                                                      GGTTAAACCCGGCAAAAAAACGCTACAAAAATGCC                                                                                                                     <  7:375925/35‑1
                                                                                                                      GGTTAAACCCGGCAAAAAAACGCTACAAAAATGCC                                                                                                                     >  8:375925/1‑35
                                                                                                                                                 aacATGCCCGCTCGAGGATCGGGCATTTTTGTAGAGTTTTTTTGCCGGGTTTAACCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATGGCGTCAACAACACTCTCTGCAGTA  <  6:251252/120‑1
                                                                                                                                                 AAAATGCCCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTACCCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATGGCGTCAACAACACTCTCTGCAGTA  >  5:251252/1‑123
                                                                                                                                                        CCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGCTTAACCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATG                          <  2:43104/92‑1
                                                                                                                                                        CCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGCTTAACCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATG                          <  2:258691/92‑1
                                                                                                                                                        CCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGCTTAACCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATG                          >  1:43104/1‑92
                                                                                                                                                        CCGATCGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGCTTAACCCGGTACTTTTCCCTGTCCGGCGGCGTGCTTCGCGCGTTCAATG                          >  1:258691/1‑92
                                                                                                                                                                                                                                                                            
ATTTGGTAAGCCGGAAATTGATGGCAGCCGTCGTCTGGGGGTGGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1931936‑1932093
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaatgcccgatcGAGGATCGGGCATTTTTGTAGCGTTTTTTTGCCGGGTTTAACCCTGTACTTTTACCTGTCCGGCGGCGTGCTTCGCGCGTTCAATGGCGTCAACAACACTCTCTGCAGTA  <  NC_000913/1932096‑1931987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.