New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2767655 =	132 (1.130)	4 (0.040)	4/226	NT	3.2%	intergenic (+300/‑55)	rnlB/yfjP	CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
	?	NC_000913	2767683 =	120 (1.140)					intergenic (+328/‑27)	rnlB/yfjP	CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein
Rejected: Frequency below/above cutoff threshold.

GTAGTGGGTTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGCCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2767814‑2767655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttctgccgttTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGATCGGC  >  NC_000913/2767683‑2767829                                                                                                                                                                                                                                                                                                                     GTAGTGGGTTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCCTCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAG                                                                                                                                                                <  3:486295/149‑1    GTGGGTTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTT                                                                                                                                                             <  8:197271/149‑1    GTGGGTTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTT                                                                                                                                                             <  5:466608/149‑1       GGTTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCAGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTG                                                                                                                                                          >  3:195091/1‑149         TTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCTTAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGCC                                                                                                                                                        <  5:182291/149‑1         TTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGCC                                                                                                                                                        <  4:199096/149‑1            ACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCTCCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGCCGT                                                                                                                                                      <  4:44952/148‑1            ACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGCCGTT                                                                                                                                                     >  6:87440/1‑149                          TGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGC                                                                                                                                                         <  1:121264/131‑1                          TGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGC                                                                                                                                                         >  2:121264/1‑131                            CAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAG                                                                                                                                                                >  3:305254/1‑122                            CAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAG                                                                                                                                                                <  4:305254/122‑1                                 TACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGC                                                                                                                                                         <  8:8414/124‑1                                 TACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGC                                                                                                                                                         >  7:8414/1‑124                                                           CCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTT                                                                                                                                                             <  1:240796/94‑1                                                           CCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTT                                                                                                                                                             >  2:240796/1‑94                                                             GGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTT                                                                                                                                                             <  8:541782/92‑1                                                             GGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTT                                                                                                                                                             >  7:541782/1‑92                                                              GAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAA                                                                                                           <  4:452693/141‑1                                                              GAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAA                                                                                                           >  3:452693/1‑141                                                                                                          CACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGA                                                                                        <  8:236177/116‑1                                                                                                          CACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGA                                                                                        >  7:236177/1‑116                                                                                                                                                      GTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCA           <  5:318910/149‑1                                                                                                                                                      GTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCA           <  6:19448/149‑1                                                                                                                                                      GTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCA           <  6:6267/149‑1                                                                                                                                                            CCGTTTTTGTTTTACTTTTCAGAGTATTTGTGATTAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGTGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGAT      <  5:492/148‑1                                                                                                                                                            CCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGATC     >  3:500050/1‑149                                                                                                                                                            CCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGAT      <  6:203882/148‑1                                                                                                                                                             CGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGATC     <  1:276761/148‑1                                                                                                                                                               TTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGATCGGC  <  2:274784/149‑1                                                                                                                                                               TTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGATCGGC  <  6:65992/149‑1                                                                                                                                                               TTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGT                                                                          >  3:404807/1‑77                                                                                                                                                               TTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGT                                                                          <  4:404807/77‑1                                                                                                                                                                                                                                                                                                                     GTAGTGGGTTAACTGATTTATCTGCTGCAATATACGTTCAGATACCCATAGCGGTAGACCGGAAAGGGAGTTCTGTAGTGGCTGCAGAACTTCAAAATTTTTCATCACCACTCCTCTGAAAAGTAAAACAAAAACGGCAGAACCGCGAGGTTCTGCCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2767814‑2767655 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttctgccgttTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGTTCTGCAGCCACTACAGAACTCCCTTTCCGGTCTACCGCTATGGGTATCTGAACGTATATTGCAGCAGATAAATCAGTTAACCCACTACGAGCCAGTGATCGGC  >  NC_000913/2767683‑2767829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.