| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4447464 | 139 (1.190) | 3 (0.030) | 3/234 | NT | 2.5% | coding (3353/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | = 4447516 | 108 (0.990) | coding (3405/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4447309‑4447464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccggGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCAC < NC_000913/4447516‑4447371 GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAA < 4:167517/149‑1GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAA > 8:196444/1‑149 CAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATACGTAACCCGGATGCTACAGAAGACGACGTAAT < 3:170605/149‑1 GATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCG > 4:272572/1‑149 GATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCG > 8:24199/1‑149 ATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 2:128333/1‑149 ATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 6:483501/1‑149 ATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 3:344022/1‑149 ATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGC > 4:323934/1‑149 TCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCC < 4:239903/149‑1 AACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCG < 6:28726/148‑1 AACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCG < 7:24199/148‑1 AACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCG > 5:28726/1‑148 AACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCG > 8:289211/1‑148 GGGCGGTTGCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGTTCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATC < 4:239324/132‑1 GGGCGCTTCCATGCCTATGGTCAGGATCTGATTCTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATC > 3:239324/1‑132 GCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCC < 5:226716/131‑1 GCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCC > 6:226716/1‑131 ACTGTTCTCTGGGCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGGTCAGAGAAGAGCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATT < 6:296009/148‑1 TTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATC > 6:150808/1‑78 TTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATC < 5:150808/78‑1 CTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCG < 7:402034/80‑1 CTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCG > 8:402034/1‑80 ATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGT < 6:47157/132‑1 ATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGT > 5:47157/1‑132 ATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAA > 6:449882/1‑149 ATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGAT > 5:62592/1‑118 ATCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGAT < 6:62592/118‑1 TCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAAC > 5:53851/1‑149 TCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTAC > 6:260511/1‑96 TCGCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTAC < 5:260511/96‑1 GCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACT > 1:125696/1‑148 GCCGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACT < 7:33813/148‑1 CGGGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTATGTAGCATCCGGGTTACGAAAAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCAC > 7:502820/1‑149 GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4447309‑4447464‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgccggGTCAGAGAAGATCTCCGCTTTCGGTTCGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGCGGACCAGAGAACAGTAACTCAC < NC_000913/4447516‑4447371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |