Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 1,335,761 IS3 (–) +3 bp :: +TCA 100% intergenic (+303/‑68) yciX → / → acnA uncharacterized protein/aconitate hydratase 1; aconitase A

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 315229 =NA (NA)19 (0.170)
+TCA
19/244 NT 100% noncoding (1/1255 nt) IS3 repeat region
?NC_000913 1335761 = 0 (0.000)intergenic (+303/‑70) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A
* ? NC_000913 = 13357630 (0.000)27 (0.240) 23/246 NT 100% intergenic (+305/‑68) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A
?NC_000913 = 2171428 NA (NA)noncoding (1258/1258 nt) IS3 repeat region

TGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTT  >  NC_000913/1335621‑1335911
                                                                                                                                              |                                                                                                                                                    
tGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgat                                                                                                                                                  <  3:436958‑M1/147‑5 (MQ=255)
cttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTgtgt                                                                                                                                                 >  6:83956‑M2/141‑148 (MQ=255)
           ttctGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaa                                                                                                                                     >  1:237903‑M1/1‑132 (MQ=255)
           ttctGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaa                                                                                                                                     >  1:282155‑M1/1‑132 (MQ=255)
           ttctGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaa                                                                                                                                     >  7:58837‑M1/1‑132 (MQ=255)
           cactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAatat                                                                                                                                     >  1:305863‑M2/130‑149 (MQ=255)
             ctgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATAtt                                                                                                                                    >  8:207231‑M2/128‑148 (MQ=255)
                ggCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaata                                                                                                                                   <  8:562051‑M1/146‑20 (MQ=255)
                cgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCAc                                                                                                                                 <  7:207231‑M2/24‑1 (MQ=255)
                 gaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCAccc                                                                                                                               >  5:514844‑M2/124‑149 (MQ=255)
                 gCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatgga                                                                                                                               <  8:58837‑M1/149‑24 (MQ=255)
                     aaCTCCTCTGGATCATTACTCACTGATCCTTGACACCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGATTCTCCTCTTTTATCAATATGGGTTGTTATCAAATCGTTACGCGATGATtcatactacacacgaaatatggaca                                                                                                                             >  5:135681‑M1/1‑122 (MQ=255)
                           tctGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCTTTACGAGCTGTTtgatcctccccacgtaatatggacccaggcct                                                                                                                      >  6:372852‑M1/1‑116 (MQ=255)
                           cgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAAt                                                                                                                     <  5:83956‑M2/36‑1 (MQ=255)
                               gATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagc                                                                                                                  >  6:358556‑M1/1‑112 (MQ=255)
                                     tACTCACTCATCCTTGACCCCGCTGCGGCGGGGTTTTCATTTCCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTCTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggccaaagcgagattc                                                                                                           >  6:468630‑M1/1‑106 (MQ=255)
                                           cTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttt                                                                                                     <  2:237903‑M1/149‑50 (MQ=255)
                                            tGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt                                                                                                    >  2:177809‑M1/1‑99 (MQ=255)
                                                 cTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaagatggacacaggcctaagcggggttcttgttttcaaat                                                                                               >  7:199672‑M1/1‑94 (MQ=255)
                                                    ctggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTaa                                                                                            <  2:305863‑M2/61‑1 (MQ=255)
                                                     aCCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgt                                                                                            <  5:358556‑M1/148‑59 (MQ=255)
                                                      ccccGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc                                                                                          <  2:282155‑M1/149‑61 (MQ=255)
                                                        ccGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccg                                                                                        <  1:177809‑M1/149‑63 (MQ=255)
                                                              ctgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTa                                                                                  >  3:250764‑M2/79‑149 (MQ=255)
                                                                     gTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgc                                                                            >  3:48107‑M1/1‑74 (MQ=255)
                                                                      ttGTCATTTGCTTTGCTTCAAGGGTTATCCTCTTTTATCTATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggtcacaggcctaagcgaggttcttgttttcaaattgttccggtcttaggcctcca                                                                          <  4:48107‑M1/149‑77 (MQ=255)
                                                                         atgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAAc                                                                        <  6:514844‑M2/81‑1 (MQ=255)
                                                                              tgctttgaCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGGTACGCGATGTTtgatcctccccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaac                                                                   <  5:372852‑M1/148‑84 (MQ=255)
                                                                               gctttgcCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactg                                                                 >  5:552490‑M1/1‑64 (MQ=255)
                                                                                tcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTa                                                                                             >  8:545584‑M2/61‑120 (MQ=255)
                                                                                tcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTa                                                                                             <  7:545584‑M2/60‑1 (MQ=255)
                                                                                        caAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaata                                                                                                                                   >  8:330042‑M1/1‑55 (MQ=255)
                                                                                        caAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaata                                                                                                                                   <  7:330042‑M1/74‑20 (MQ=255)
                                                                                                    tctTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatgga                                                                                                                               >  7:133014‑M1/1‑43 (MQ=255)
                                                                                                    tctTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatgga                                                                                                                               <  8:133014‑M1/66‑24 (MQ=255)
                                                                                                      ttttATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaat                                           >  6:341346‑M1/1‑41 (MQ=255)
                                                                                                      tcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAc                                                                                                       <  6:430620‑M2/50‑1 (MQ=255)
                                                                                                      tcacttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAc                                                                                                       >  5:430620‑M2/39‑88 (MQ=255)
                                                                                                        acttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgtc                                                                           <  2:383188‑M2/78‑1 (MQ=255)
                                                                                                        acttagccgcgtgtccactattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgtc                                                                           >  1:383188‑M2/37‑114 (MQ=255)
                                                                                                          aTCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacat                                      >  5:51272‑M1/1‑37 (MQ=255)
                                                                                                                    gttgttATCAAATCGTTACGCGATTTTtgatcctaccgacgtaatatggacacaggcctaatcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataa                             <  5:468630‑M1/148‑122 (MQ=255)
                                                                                                                         ctattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCa                                                                          >  7:540180‑M2/20‑98 (MQ=255)
                                                                                                                         ctattgctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCa                                                                          <  8:540180‑M2/79‑1 (MQ=255)
                                                                                                                           tCAAATCGTTACGCGATGTTtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataattaaacac                     >  2:13729‑M1/1‑20 (MQ=255)
                                                                                                                               ctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAc                       <  3:74684‑M2/130‑1 (MQ=255)
                                                                                                                               ctgggtaagatcaGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAc                       >  4:74684‑M2/14‑143 (MQ=255)
                                                                                                                                             tttgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataattaaacaccgttgcccgcattatttc   <  6:552490‑M1/149‑148 (MQ=255)
                                                                                                                                              ttgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataattaaacaccgttgcccgcattatttcc  <  3:293792‑M1/149‑149 (MQ=255)
                                                                                                                                              |                                                                                                                                                    
TGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCACTACTACAGCCTGCCGCTT  >  NC_000913/1335621‑1335911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.