New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 284258 =93 (1.020)3 (0.030) 3/250 NT 3.9% coding (1058/1968 nt) yagF CP4‑6 prophage; dehydratase family protein
?NC_000913 284307 = 60 (0.690)coding (1107/1968 nt) yagF CP4‑6 prophage; dehydratase family protein
Rejected: Frequency below/above cutoff threshold.

CCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/284409‑284258
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTAGAGCCG  >  NC_000913/284307‑284454
                                                                                                                                                                                                                                                                                                            
CCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGT                                                                                                                                                         <  2:384299/149‑1
CCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGGCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGT                                                                                                                                                         <  1:86785/149‑1
  GGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGA                                                                                                                                                       <  5:342335/149‑1
                       ATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGGCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGCGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGG                                                                                                                                                           >  3:323324/1‑124
                                                                       GATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGG                                                                                                                                                          <  3:282557/77‑1
                                                                       GATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGG                                                                                                                                                          >  4:282557/1‑77
                                                                                                    AGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAG                                                     >  7:336262/1‑149
                                                                                                        TCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTTGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCC                                                 >  2:357443/1‑149
                                                                                                                 GCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCT                                        <  8:336262/149‑1
                                                                                                                                                   GTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTA        >  3:390330/1‑147
                                                                                                                                                    TGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTAGAG     <  4:390330/149‑1
                                                                                                                                                     GATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTAGAGC    >  1:203536/1‑149
                                                                                                                                                     GATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTAGAGC    >  6:16362/1‑149
                                                                                                                                                       TGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTAGAGCCG  >  4:116461/1‑149
                                                                                                                                                                                                                                                                                                            
CCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/284409‑284258
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGCAGGCGTCCGAGCGCCGGGCGCGCTTCCGCCAGTGCCTGCGCGAGCAGGACGGCGTAGAGCCG  >  NC_000913/284307‑284454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.