New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 180409563 (0.690)3 (0.030) 3/250 NT 4.4% pseudogene (578/1476 nt) arpB pseudogene, ankyrin repeats
?NC_000913 = 1804113 70 (0.810)pseudogene (596/1476 nt) arpB pseudogene, ankyrin repeats
Rejected: Frequency below/above cutoff threshold.

GACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1803977‑1804095
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccctGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGGGACCTGAACTGATGAACTTATCAAGCGAAAGAAAGCCCCGTGCTGTCCTGTGGGTGTCTCTGACGG  <  NC_000913/1804113‑1803969
                                                                                                                                                                                                                                                                        
GACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTACCGATGCTCAGAACTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATA                                                                                                                     <  2:57794/149‑1
     CCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAAT                                                                                                                      <  7:410304/143‑1
     CCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCTGGAACTCCCACAGGTAATAGGGGCAGAAT                                                                                                                      >  8:410304/1‑143
                                                                                                                 GCCCCTGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGGGACCTGAACTGATGAACTTATCAAGCGAAAGAAAGCCCCGTGCTGTCCTGTGGGTGTCTCTGAC    >  5:15086/1‑149
                                                                                                                    CCTGGAACTCCCACAGGTAATAGGTGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGGGACCTGAACTGATGAACTTATCAAGCGAAAGAAAGCCCCGTGCTGTCCTGTGGGTGTCTCTGACGG  >  8:248734/1‑148
                                                                                                                                                                                                                                                                        
GACACCCACAGGACAGCACGGGGCTTTCTTTCGCTTGATAAGTTCATCAGTTCAGGTCCCGATGCTCAGACCTGGGCTGATAGATATGTTCGCAACTGTGCAATTGCTATTCTGCCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1803977‑1804095
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccctGGAACTCCCACAGGTAATAGGGGCAGAATAGCAATTGCACAGTTGCGAACATATCTATCAGCCCAGGTCTGAGCATCGGGACCTGAACTGATGAACTTATCAAGCGAAAGAAAGCCCCGTGCTGTCCTGTGGGTGTCTCTGACGG  <  NC_000913/1804113‑1803969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.