New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4555361 =42 (1.150)7 (0.210) 7/246 3.1 15.6% intergenic (+12/+129) uxuR/yjiC fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
?NC_000913 4555390 = 37 (1.100)intergenic (+41/+100) uxuR/yjiC fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAA  >  NC_000913/4555228‑4555505
                                                                                                                                     |                                                                                                                                                
tGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTAATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAAc                                                                                                                                   >  8:115025/1‑149 (MQ=255)
aggCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATACTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGAATCATGGCCGCTGGAAAAAGTCGACGCCAGCCTTATTATAATAAGCGAAATGGTAAAc                                                                                                                                   >  8:132446/2‑149 (MQ=255)
  gCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTaaa                                                                                                                                    >  1:184450/1‑146 (MQ=255)
  gCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTaaa                                                                                                                                    <  2:184450/146‑1 (MQ=255)
           cagcaTCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTgcgc                                                                                                                        >  6:7374/1‑149 (MQ=255)
                tCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCt                                                                                                                   >  2:142124/1‑149 (MQ=255)
                        aCGTTAAGCAACGTCTGCTGGACTTCTCGAACGTTGACGATATTTATTTTGATGGCTCTCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                           <  4:141504/149‑1 (MQ=255)
                        aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                           <  8:78501/149‑1 (MQ=255)
                        aCGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaa                                                                                                           <  4:139266/149‑1 (MQ=255)
                              aGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTc                                                                                                                               <  6:61662/123‑1 (MQ=255)
                              aGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTc                                                                                                     <  1:142124/149‑1 (MQ=255)
                               gCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGACTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCg                                                                                                    <  4:133533/149‑1 (MQ=255)
                                   cGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAAt                                                                                                <  7:115025/149‑1 (MQ=255)
                                   cGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAAt                                                                                                >  2:19408/1‑149 (MQ=255)
                                     tCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGa                                                                                              <  5:7374/149‑1 (MQ=255)
                                        gctgGAATTCTCGACCGTTGACGATATTTATTTTGATGGATATCTGTTTGATTCATGGCAGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGt                                                                                            <  7:132446/148‑1 (MQ=255)
                                         ctgGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTAt                                                                                          >  5:145771/1‑149 (MQ=255)
                                          tgGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTAt                                                                                          >  6:18971/1‑148 (MQ=255)
                                            gAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTa                                                                                        <  6:145771/148‑1 (MQ=255)
                                                    gAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTaaa                                                                               >  8:100375/1‑149 (MQ=255)
                                                          tGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAg                                                                         >  3:19556/1‑149 (MQ=255)
                                                                  tttatttTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTg                                                                  <  5:18971/148‑1 (MQ=255)
                                                                      ttttGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTa                                                              <  7:100375/148‑1 (MQ=255)
                                                                               cTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGta                                                    >  6:37552/1‑149 (MQ=255)
                                                                                 aTCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAg                                                             >  8:133108/1‑138 (MQ=255)
                                                                                 aTCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAg                                                             <  7:133108/138‑1 (MQ=255)
                                                                                      tttGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaag                                                                                                          <  4:41574/88‑1 (MQ=255)
                                                                                      tttGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTaag                                                                                                          >  3:41574/1‑88 (MQ=255)
                                                                                         gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTc                                                                                                                    <  1:118305/75‑1 (MQ=255)
                                                                                         gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTc                                                                                                                    >  2:118305/1‑75 (MQ=255)
                                                                                         gATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGaa                                           <  1:19408/148‑1 (MQ=255)
                                                                                            tCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGt                                        >  2:61721/1‑148 (MQ=255)
                                                                                                         aTAAAGTCGACGCCTGACTTATTATAATAATCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTTTTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCAttctt                          <  4:19556/149‑1 (MQ=255)
                                                                                                             aGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGa                                            >  7:26779/1‑127 (MQ=255)
                                                                                                             aGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGa                                            <  8:26779/127‑1 (MQ=255)
                                                                                                                     ccTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTAt              <  5:37552/149‑1 (MQ=255)
                                                                                                                      cagACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGtt                                       >  6:122129/3‑123 (MQ=255)
                                                                                                                      cTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGtt                                       <  5:122129/123‑1 (MQ=255)
                                                                                                                          cTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACt                                                                                      <  2:100448/72‑1 (MQ=255)
                                                                                                                          cTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACt                                                                                      >  1:100448/1‑72 (MQ=255)
                                                                                                                           ttattaTAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTAt                                                         <  2:159943/100‑1 (MQ=255)
                                                                                                                                 taataaGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATaa  >  5:4690/1‑149 (MQ=255)
                                                                                                                                     |                                                                                                                                                
TGGCAATGTGGCAGCATCTGGAAAACGTTAAGCAACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGGTAAACGTTCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAA  >  NC_000913/4555228‑4555505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.