| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 19 (0.520) | 14/266 | 1.8 | 38.0% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 3986004 | 31 (0.850) | coding (4/1656 nt) | aslA | putative Ser‑type periplasmic non‑aryl sulfatase | |||||
CCAGATACTGGTTTGGGTGATCGTATCCGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAATTATTTATTTATCCAGAAAATGAATTGGAAAATC > NC_000913/3985866‑3986151 | ccAGATACTGGTTTGGGTGATCGTATCCGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctg < 3:133481‑M2/149‑11 (MQ=255) tCGTATCCGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggggatgctgccaaattactgatttagtg < 4:19060‑M2/148‑30 (MQ=255) tCCGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatga > 3:65859‑M2/1‑114 (MQ=255) tCCGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAat > 1:121477/1‑148 (MQ=255) cGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAatga < 7:130961/148‑1 (MQ=255) cAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTcc > 4:143833/1‑110 (MQ=255) cAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTcc < 3:143833/110‑1 (MQ=255) aaGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgat > 1:187846‑M2/1‑107 (MQ=255) aaGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgat < 2:187846‑M2/130‑24 (MQ=255) cgtgcgGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGTGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGc < 8:24796/148‑1 (MQ=255) gTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCAt > 2:11398/1‑115 (MQ=255) gTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCAt < 1:11398/115‑1 (MQ=255) aGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTga < 2:121477/149‑1 (MQ=255) ggggTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCct > 3:9241/1‑149 (MQ=255) gggTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCctc < 4:9241/149‑1 (MQ=255) tgctgcGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGa > 2:141740/1‑149 (MQ=255) cgcTGGCCATGCGAGGACGAGCGGCGGCGACAGCAACAACCAGTCGTTTGGGTGAACACGACAATTCggtgatgctgccaacgtactgatttagtgtctgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc > 4:133481‑M2/1‑67 (MQ=255) ccATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTa > 5:60893/1‑149 (MQ=255) cATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTa > 3:54836/1‑148 (MQ=255) aTGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACa < 1:141740/149‑1 (MQ=255) aTGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTATGGGTGAAACCGAAAATTCggtgaagctgccaacttactgatttagtgtatgaaggtgtttttgaggtgctccagtggcttctttttctatcagctgtccctcctgtt < 6:134481‑M2/148‑90 (MQ=255) aTGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGGTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACa > 5:134892/1‑149 (MQ=255) gagGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagc < 5:141130‑M2/148‑94 (MQ=255) agGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta > 6:141130‑M2/1‑54 (MQ=255) gAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACataaataa > 2:143877/1‑149 (MQ=255) agagCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca < 6:160359‑M2/124‑75 (MQ=255) agagCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca > 5:160359‑M2/1‑50 (MQ=255) gACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgc < 3:938‑M2/149‑111 (MQ=255) gACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt > 2:143345‑M2/1‑39 (MQ=255) gACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt < 1:143345‑M2/106‑68 (MQ=255) gACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACaaaaa > 7:85469/1‑148 (MQ=255) cAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAaaataa < 8:85469/149‑1 (MQ=255) acaacaaGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAattat < 1:143877/149‑1 (MQ=255) caacaaGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAattatt > 2:193034/1‑149 (MQ=255) aacaaGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAAttattt < 6:134892/149‑1 (MQ=255) acaaGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGATCCGGTTTCATGTCATCAAAATGATGAGGTAATTAAGCATTGATAATTCAGAACCCTCTCCCTGACAGGATGATTAAATAAATAATAGTGAAAAAAATAAattattaa > 5:87321/1‑147 (MQ=255) gACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAAttatttattta > 6:12291/1‑149 (MQ=255) tttGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAATTATTTATTTATc > 2:11283/1‑147 (MQ=255) aaaCGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAATTATTTATTTATCCAGAAAATGaa > 6:148311/1‑149 (MQ=255) aaCGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAATTATTTATTTATCCAGAAAATGAAt < 1:11283/149‑1 (MQ=255) aCGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAATTATTTATTTATCCAGAAAATGAAtt > 3:54017/1‑149 (MQ=255) gAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTaa > 6:168588/1‑56 (MQ=255) aaaTTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGgatgat > 7:97260/1‑92 (MQ=255) aaaTTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGgatgat < 8:97260/92‑1 (MQ=255) aaTTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggg > 2:170724‑M2/1‑5 (MQ=255) aaTTCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggg < 1:170724‑M2/108‑104 (MQ=255) aTTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGAC‑AAAATAAATTATTTATTTATCCAGAAAATGAATTGGAAAAt < 1:134604/149‑1 (MQ=255) tCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt > 2:101109‑M2/1‑2 (MQ=255) tCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt < 1:101109‑M2/91‑90 (MQ=255) cggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatct > 3:19060‑M2/1‑1 (MQ=255) | CCAGATACTGGTTTGGGTGATCGTATCCGGCAAAGCCTTTGCGTGCGGTGGCAGTTGACGGGGTATCTGCTGCGCTGGCCATGAGAGGAAGAGCGGCGGCGACAGCAACAACAAGACGTTTGGGTGAAAACGAAAATTCCATGCAAAATGCTCCGGTTTCATGTCATCAAAATGATGACGTAATTAAGCATTGATAATTGAGATCCCTCTCCCTGACAGGATGATTACATAAATAATAGTGACAAAAATAAATTATTTATTTATCCAGAAAATGAATTGGAAAATC > NC_000913/3985866‑3986151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |