New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2291337	NA (NA)	4 (0.050)	4/244	NT	NA	noncoding (185/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
	?	NC_000913	= 2291342	NA (NA)					noncoding (190/199 nt)	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site

TTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2291181‑2291337 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgatggTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTT  <  NC_000913/2291342‑2291197                                                                                                                                                                                                                                                                                                                 TTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAG                                                                                                                                                            <  2:255129/149‑1    ATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCC                                                                                                                                                         >  7:122715/1‑149     TGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCC                                                                                                                                                         >  5:300159/1‑148       ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAT                                                                                                                                                      >  5:83231/1‑149       ACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGAT                                                                                                                                                      <  7:337505/149‑1         AAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGG                                                                                                                                                    >  1:126570/1‑149         AAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGG                                                                                                                                                    >  8:181519/1‑149                                                                                                                  CCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTG                                                               >  3:216758/1‑129                                                                                                                  CCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTG                                                               <  4:216758/129‑1                                                                                                                                      TTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA                                                                  <  3:204453/106‑1                                                                                                                                      TTTGTCAACAGTCTAGCCCGATGGCATCACCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA                                                                  >  4:204453/1‑106                                                                                                                                                       CCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGG       >  8:86618/1‑148                                                                                                                                                        CGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCA     <  8:257024/149‑1                                                                                                                                                        CGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCA     <  8:90860/149‑1                                                                                                                                                           TGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTT  >  8:220100/1‑149                                                                                                                                                           TGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTT  <  8:239298/149‑1                                                                                                                                                                                                                                                                                                                 TTTATGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGATCGATCAATTTATTGAATTTACACAATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACTAAGCGCACTTTGTCAACAGTCTAGCCCGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2291181‑2291337 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgatggTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATTGTGTAAATTCAATAAATTGATCGATCCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTT  <  NC_000913/2291342‑2291197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.