| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,867,796 | IS1 (+) +9 bp | coding (950‑958/1140 nt) | nlpD ← | activator of AmiC murein hydrolase activity, lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2867796 = | 0 (0.000) | 27 (0.720) | 25/240 | 0.6 | 100% | coding (958/1140 nt) | nlpD | activator of AmiC murein hydrolase activity, lipoprotein |
| ? | NC_000913 | = 3584195 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 2867804 | 0 (0.000) | 43 (1.150) | 38/240 | 0.1 | 100% | coding (950/1140 nt) | nlpD | activator of AmiC murein hydrolase activity, lipoprotein |
| ? | NC_000913 | 3583428 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
CCCTTGTAACGAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTT > NC_000913/2867654‑2867916 | cccTTGTAACGAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATg > 3:90847/1‑149 (MQ=255) tAACGAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggt < 4:90847‑M1/148‑4 (MQ=255) cctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTgatgat > 3:39436‑M1/134‑149 (MQ=255) gAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTT‑TTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgct > 7:47633‑M1/1‑140 (MQ=255) aatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAAt > 6:45108‑M1/130‑148 (MQ=255) gcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTAcc < 6:151582‑M1/28‑1 (MQ=255) gcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTAcc > 5:151582‑M1/122‑149 (MQ=255) gtgtTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCTCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgattta < 6:161063‑M1/149‑27 (MQ=255) tggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCcgc < 6:101356‑M1/36‑1 (MQ=255) ttGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTT‑TTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgt < 8:47633‑M1/149‑31 (MQ=255) tGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaact > 3:6801‑M1/1‑119 (MQ=255) tGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaact < 4:6801‑M1/135‑17 (MQ=255) gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGt < 3:166494‑M1/45‑1 (MQ=255) gaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGa < 1:57389‑M1/23‑1 (MQ=255) gaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGa > 2:57389‑M1/98‑120 (MQ=255) aCCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttag < 2:148706‑M1/128‑28 (MQ=255) aCCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttag > 1:148706‑M1/1‑101 (MQ=255) aTGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 7:8949‑M1/1‑97 (MQ=255) gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcgc > 5:101356‑M1/86‑148 (MQ=255) gCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg < 8:8949‑M1/149‑59 (MQ=255) cTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt > 3:15413‑M1/1‑90 (MQ=255) cTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt < 4:15413‑M1/147‑58 (MQ=255) ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCgg < 1:159098‑M1/75‑1 (MQ=255) ggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCgg > 2:159098‑M1/74‑148 (MQ=255) gtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTc < 6:182442‑M1/77‑1 (MQ=255) ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc > 7:26764‑M1/1‑80 (MQ=255) ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatg < 1:214627‑M1/116‑37 (MQ=255) ccccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatg > 2:214627‑M1/1‑80 (MQ=255) gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATaaa > 1:150863‑M1/70‑126 (MQ=255) gagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATaaa < 2:150863‑M1/57‑1 (MQ=255) ccGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta > 4:7147‑M1/1‑78 (MQ=255) gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaacaagttggagtcattaccCATTATGTTTGCTGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGAt > 5:182442‑M1/68‑149 (MQ=255) ccTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc > 1:42154‑M1/1‑75 (MQ=255) ccTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:42154‑M1/138‑64 (MQ=255) aaCTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc < 3:7147‑M1/147‑77 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGa > 8:170017‑M1/62‑142 (MQ=255) tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGa < 7:170017‑M1/81‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGcc < 7:74731‑M1/89‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGcc < 6:48440‑M1/89‑1 (MQ=255) tcttGTTGTTCCCGGGCCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc > 5:192870‑M1/1‑67 (MQ=255) tcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgcctacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc > 1:50927‑M1/1‑67 (MQ=255) atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtg > 8:74731‑M1/52‑149 (MQ=255) cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg < 7:58046‑M1/107‑51 (MQ=255) cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg > 8:58046‑M1/1‑57 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCa > 8:134945‑M1/48‑100 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCa < 7:134945‑M1/53‑1 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgctgc > 4:166494‑M1/48‑149 (MQ=255) ccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttac > 6:102229‑M1/1‑56 (MQ=255) ccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttac < 5:102229‑M1/75‑20 (MQ=255) cGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagct < 3:6728‑M1/149‑95 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTgatgat < 2:130532‑M1/16‑1 (MQ=255) attatctgaacataaaacactatcaataagttggagtcattaccCATTATGTTTgatgat > 1:130532‑M1/45‑60 (MQ=255) aTTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggg < 8:26764‑M1/149‑104 (MQ=255) ttGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct > 2:157384‑M1/1‑45 (MQ=255) cataaaacactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCa > 3:30382‑M1/35‑84 (MQ=255) gtCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggt < 6:192870‑M1/149‑109 (MQ=255) tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggtgtggt < 2:50927‑M1/148‑109 (MQ=255) tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag < 8:151537‑M1/87‑48 (MQ=255) tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag > 7:151537‑M1/1‑40 (MQ=255) acactatcaataagttggagtcattaccCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCtt > 5:48440‑M1/29‑149 (MQ=255) gCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatgg > 2:76109‑M1/1‑25 (MQ=255) gCACTCAGGTAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatgg < 1:76109‑M1/62‑38 (MQ=255) tAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta < 4:35824‑M1/111‑96 (MQ=255) tAATCATCATTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta > 3:35824‑M1/1‑16 (MQ=255) atcatTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag > 6:143139‑M1/1‑11 (MQ=255) atcatTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag < 5:143139‑M1/58‑48 (MQ=255) catTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc < 7:83038‑M1/82‑74 (MQ=255) catTATGTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc > 8:83038‑M1/1‑9 (MQ=255) | CCCTTGTAACGAATTTCAAAATGCAAGCGTGTTGAACTGGTTCCGGTGCTACCCATGGTCGCTATTTTTTGCCCCGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCCTT > NC_000913/2867654‑2867916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |