| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4576863 = | 127 (0.980) | 6 (0.050) | 6/260 | 11.8 | 4.9% | intergenic (+8/+49) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| ? | NC_000913 | 4576890 = | 117 (0.970) | intergenic (+35/+22) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTATAAAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4577020‑4576863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggagcggTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCGG > NC_000913/4576890‑4577036 TTATAAAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACAT > 8:317044/1‑149 TATAAAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATC > 3:324030/1‑149 TATAAAATTAATCGCTTCGATATTGGCTTGTGTAAAGTCAAATTAGGTCAGGAATGGCCGTGTATACATAAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAACTTTTATAGAAAATACCGCTCCCGGCACCACATC > 2:461916/1‑149 ATAAAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCG > 2:207718/1‑149 TAAAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGG > 1:567534/1‑149 AAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGA < 5:10128/149‑1 AAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGA < 8:115669/149‑1 AATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAG < 1:207718/149‑1 TTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCG > 5:377527/1‑149 TTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCGGTActgc > 6:441345/1‑144 TTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAG > 3:317645/1‑127 TTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAG < 4:317645/127‑1 GAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTTAGTTTTATAGAAAATACCGCTCCCGACCCCACATCGGGAGCGGGTTTTTGGATTAAACTTTCCGGGTATTTGAGTTATTGATCGc > 8:439518/1‑147 ATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAA > 4:363435/1‑149 AAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTG < 6:377527/148‑1 AAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGAC < 3:363435/149‑1 CGCTCCCGACACCACATCGGGAGCGGTATTTTCTATAAAACTTACCGCTCATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAA > 7:546153/1‑149 TCGGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTT > 3:6694/1‑149 TCGGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTT < 2:304925/148‑1 GGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAATCCAATATCGAAGCCATTAATTTTATAACGATGTTTCA > 2:455533/1‑149 GGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCA < 3:500179/149‑1 GGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGA > 5:169497/1‑142 GGGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTAGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGA < 6:169497/142‑1 GGAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCAC < 4:6694/149‑1 GAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACT < 1:452623/149‑1 GAGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACT > 2:233910/1‑149 AGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTG < 8:291904/149‑1 AGCGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCCAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTG < 4:311167/149‑1 CGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCG < 4:155963/149‑1 CGGTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCG > 7:161242/1‑149 CGGTATTTTCTATAAAACTAACCGCTTATTTGATATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACAGAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCG < 2:398018/149‑1 GTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCGG > 2:484420/1‑148 GTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCGG > 2:345032/1‑148 TTATAAAATTAATGGCTTCGATATTGGCTTGTGTACCGTCAATTTAGGTCAGGAATGGCCGTGTATACATCAAGAATTACTCGACATTTTCGATGAATATCTCAAATAAGCGGTAAGTTTTATAGAAAATACCGCTCCCGACACCACATCGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4577020‑4576863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggagcggTATTTTCTATAAAACTTACCGCTTATTTGAGATATTCATCGAAAATGTCGAGTAATTCTTGATGTATACACGGCCATTCCTGACCTAAATTGACGGTACACAAGCCAATATCGAAGCCATTAATTTTATAACGATGTTTCACTGCGG > NC_000913/4576890‑4577036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |