| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1474033 = | 160 (1.230) | 6 (0.050) | 6/260 | 11.8 | 3.9% | intergenic (+20/‑188) | ydbA/ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase |
| ? | NC_000913 | 1474063 = | 151 (1.250) | intergenic (+50/‑158) | ydbA/ydbC | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/putative NAD(P)‑binding oxidoreductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAAATCAGTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTAAACAAGATTACTGGATGAGTTGCTCTATTGTCCTGAAAGACACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1474190‑1474033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcggtttTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCGTTTTATTACAG > NC_000913/1474063‑1474209 GAAAAATCAGTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTATACAAGATTACTGGATGAGTTGCTCTATTGTCCTTAAAGACACAAAACAAAACGCGTCACGAACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCG > 2:461849/1‑149 AATCAGTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTAAACAAGATTACTGGATGAGTTGCTCTATTGTCCTGAAAGACACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCACCCTGTATCAGCGTTGC < 5:222857/149‑1 AATCAGTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTAAACAAGATTACTGGATGAGTTGCTCTATTGTCCTGAAAGACACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGC < 2:423926/149‑1 AATCAGTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTAAACAAGATTACTGGATGAGTTGCTCTATTGTCCTGAAAGACACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGC < 3:265038/149‑1 GTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTAAACAAGATTACTGGATGAGTTGCTCTATTGTCCTGAAAGACACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGCGGTT > 2:251542/1‑148 ACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTG > 4:506645/1‑149 AAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTT < 3:506645/149‑1 CACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATC > 2:307254/1‑149 AAAAACCGCAACCTGTATCAGCGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTG > 8:328438/1‑73 AAAAACCGCAACCTGTATCAGCGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTG < 7:328438/73‑1 CCTGTATCAGCGTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTC < 1:307254/149‑1 GTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAAT < 5:335308/143‑1 GTTGCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAAT > 6:335308/1‑143 TTGCGGTTTTTTTATTGCCGGATTTGGGACGAGACGCGTTTTGTTTTGTTTATTTCACGACAATAGAGAAACTGATACAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTAGTTTATATACTTATTTTTCTTAATCCGTTT < 8:501194/148‑1 GCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCTTTTTAT > 4:478407/1‑149 GCGGTTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCGTTTTtt > 2:7510/1‑147 CGGTTTTTTTATTGCCGGATGTGGTTCGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCGTTTTATT < 5:444639/149‑1 TTTTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCGTTTTATTA > 2:150799/1‑147 TTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCGTTTTATTACAG < 6:122914/148‑1 GAAAAATCAGTATAGAAACGAAAAGAGATAAATAATGCGAAGGTGTAAACAAGATTACTGGATGAGTTGCTCTATTGTCCTGAAAGACACAAAACAAAACGCGTCACGTACCACATCCGGCAATAAAAAAACCGCAACCTGTATCAGCGTTGCGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1474190‑1474033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcggtttTTTTATTGCCGGATGTGGTACGTGACGCGTTTTGTTTTGTGTCTTTCAGGACAATAGAGCAACTCATCCAGTAATCTTGTTTACACCTTCGCATTATTTATCTCTTTTCGTTTCTATACTGATTTTTCTTAATCCGTTTTATTACAG > NC_000913/1474063‑1474209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |