New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3935137 =	34 (1.100)	4 (0.140)	4/256	3.3	11.0%	coding (1360/1506 nt)	rbsA	D‑ribose ABC transporter ATPase
	?	NC_000913	3935197 =	33 (1.130)					coding (1420/1506 nt)	rbsA	D‑ribose ABC transporter ATPase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGTCTGATGACACGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCTGTGGGCAAGCTTAATCGCGTGAATCAGGA  >  NC_000913/3935000‑3935279                                                                                                                                          |                                                                                                                                               gcgGTCTGATGACACGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGaa                                                                                                                                     <  2:87421/149‑1 (MQ=255)       tgatgaCACGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTAt                                                                                                                                 >  4:24394/1‑147 (MQ=255)        gatgaCACGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAg                                                                                                                              >  1:114173/1‑149 (MQ=255)         atgaCACGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAg                                                                                                                              <  2:114173/148‑1 (MQ=255)            gcacGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCAt                                                                                                                          <  7:107464/148‑1 (MQ=255)              acGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGga                                                                                                                                               <  4:96321/126‑1 (MQ=255)              acGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGga                                                                                                                                               >  3:96321/1‑126 (MQ=255)              acGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGa                                                                                                                        <  4:123512/149‑1 (MQ=255)              acGCCCAAAAGTGTTGATCCTTGATGAACCTCCCCGTGGCGTAGATGTCGGCGCGATAAAAGAGATATATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCAGACTTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCAt                                                                                                                          >  7:86816/1‑147 (MQ=255)                               tCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGt                                                                                                        >  1:124084/1‑148 (MQ=255)                                       gaACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTcatgcatg                                                                                                >  5:53218/1‑148 (MQ=255)                                         aCCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGagg                                                                                             <  3:24394/149‑3 (MQ=255)                                         aCCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAg                                                                                             <  2:124084/149‑1 (MQ=255)                                         aCCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAg                                                                                             <  1:94894/149‑1 (MQ=255)                                              cccGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTCGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCAt                                                                                        <  4:18582/149‑1 (MQ=255)                                               ccGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCAtc                                                                                       >  7:122304/1‑149 (MQ=255)                                                      ggaGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCAGGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCgg                                                                                <  6:109761/147‑1 (MQ=255)                                                                 cgagAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAATCCGATGGCTTGAGCATCATTCTGGTGTCATCTGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATTCATGAAGGGAATCTCAGCGGGGAATTTACTc                                                                     <  8:86816/146‑1 (MQ=255)                                                                        aaaGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCa                                                              <  6:53218/149‑1 (MQ=255)                                                                              aTCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCAc                                                        >  3:3301/1‑149 (MQ=255)                                                                               tCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCAcc                                                       >  2:2264/1‑149 (MQ=255)                                                                                     aaCTGATTAACCAGTTAAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAgg                                                   >  5:85819/1‑147 (MQ=255)                                                                                          aTTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGaa                                                                                                                                     <  5:43835/60‑1 (MQ=255)                                                                                          aTTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGaa                                                                                                                                     >  6:43835/1‑60 (MQ=255)                                                                                               ccAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATgg                                       <  4:3301/149‑1 (MQ=255)                                                                                               ccAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATgg                                       >  3:119329/1‑149 (MQ=255)                                                                                                cAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGc                                      <  6:85819/149‑1 (MQ=255)                                                                                                  gTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTg                                    <  1:2264/149‑1 (MQ=255)                                                                                                       aaGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCt                               >  5:78854/1‑149 (MQ=255)                                                                                                        aGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCAccc                                                      >  2:18264/1‑125 (MQ=255)                                                                                                        aGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCAccc                                                      <  1:18264/125‑1 (MQ=255)                                                                                                                        atcatTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCTGTGGGCAAGCTTAATcg              >  7:47267/1‑149 (MQ=255)                                                                                                                            ttCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCTGTGGGCAAGCTTAATCGCGt           >  5:81780/1‑148 (MQ=255)                                                                                                                                    tCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCTGTGGGCAAGCTTAATCGCGTGAATCAGGa  <  6:78854/149‑1 (MQ=255)                                                                                                                                          |                                                                                                                                               GCGGTCTGATGACACGCCCCAAAGTGTTGATCCTTGATGAACCTACCCGTGGCGTAGATGTCGGCGCGAAAAAAGAGATCTATCAACTGATTAACCAGTTCAAAGCCGATGGCTTGAGCATCATTCTGGTGTCATCGGAGATGCCAGAAGTATTAGGCATGAGCGATCGCATCATCGTCATGCATGAAGGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGCCGCTGTGGGCAAGCTTAATCGCGTGAATCAGGA  >  NC_000913/3935000‑3935279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.