New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2589519	28 (0.770)	6 (0.170)	6/232	2.4	16.4%	coding (1925/3114 nt)	acrD	aminoglycoside/multidrug efflux system
	?	NC_000913	= 2589539	34 (0.970)					coding (1945/3114 nt)	acrD	aminoglycoside/multidrug efflux system
Rejected: Frequency below/above cutoff threshold.

TGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2589436‑2589519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacGCTCGATAATGGCAAACGAGGTGCCGGTCTTACTGTC  <  NC_000913/2589539‑2589503                                                                                                                           TGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACGCTCGATAATGGCAAACGAGGTGCCGGTCTTACTGTC  >  7:154761/1‑121 TGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACGCTCGATAATGGCAAACGAGGTGCCGGTCTTACTGTC  <  8:154761/121‑1            GTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACGCTCGATAATGGCAAACGAGGTGCCGGTCTTACT     <  3:5232/107‑1            GTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACGCTCGATAATGGCAAACGAGGTGCCGGTCTTACT     >  4:5232/1‑107                 GGGCAAAACGTGGCGCGAATGTTTATCCGCCTGATAGACTGGAGCGAACGCGACAGTAAGACCGGCACGCTCGATAATGGCAAACGAGGTGC               <  6:113594/92‑1                 GGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCACGCTCGATAATGGCAAACGAGGTGC               >  5:113594/1‑92                                                                                                                           TGGCCCTGGGGGTAACGGGCAAAACGTGGCGCGAATGTTTATCCGCCTGAAAGACTGGAGCGAACGCGACAGTAAGACCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2589436‑2589519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacGCTCGATAATGGCAAACGAGGTGCCGGTCTTACTGTC  <  NC_000913/2589539‑2589503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.