| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4037399 = | NA (NA) | 9 (0.110) | 3/256 | NT | 75.3% | intergenic (+64/‑120) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4209883 = | 3 (0.040) | intergenic (+34/‑160) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
AGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACA > NC_000913/4209737‑4210028 | caccgtgtacgcttagtcgcttaacctcacaccccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa > 4:232330‑M2/147‑147 (MQ=255)caccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa < 3:29176‑M2/2‑1 (MQ=255)caccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa < 8:88284‑M2/1‑1 (MQ=255)caccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa < 1:232963‑M2/1‑1 (MQ=255)caccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa > 7:332924‑M2/147‑147 (MQ=255)caccgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa < 6:105096‑M2/1‑1 (MQ=255) accgtgtactattattcgcttaacctcacaacccgtagatgtttctttcgattcatcatcgtgtttcgaaaatttgagatactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 4:86935‑M2/3‑1 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa > 8:35236‑M2/146‑147 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa > 8:308422‑M2/146‑147 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa > 7:371897‑M2/146‑147 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa < 1:238448‑M2/1‑1 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaa > 2:238448‑M2/146‑146 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 4:171790‑M2/3‑1 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 3:222082‑M2/3‑1 (MQ=255) accgtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 2:227517‑M2/3‑1 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtc > 2:380314‑M2/143‑148 (MQ=255) gtgtacgcttagtcgcttaacctcacaacccgaagatgtttctttcgatacataatcgtgttgcgataagttgagagactcaagaacaacttacgtagttcagtgtttcaaattacagctagatccagaattttaaagagcaAATAtc > 2:277555‑M2/143‑148 (MQ=255) tgtacgcttagtcgcttaacctcacaccccgaagatgtgtctttcgattcatcatcgtgttgcgaaaatttgagagactcacgcacaactagcgttgttcagtgtttcacttttcacctagatcccgatttttaaagagcaAATAtct > 2:111387‑M2/142‑148 (MQ=255) cgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaaa > 8:249417‑M2/138‑148 (MQ=255) cgcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaaa > 2:127118‑M2/138‑148 (MQ=255) gcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaaa > 1:236340‑M2/137‑147 (MQ=255) gcttagtcgcttaacctcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCaaa > 7:304113‑M2/137‑147 (MQ=255) tcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtct > 5:145146‑M2/121‑127 (MQ=255) tcacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATAtct < 6:145146‑M2/7‑1 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa < 8:106809‑M2/2‑1 (MQ=255) cacaacccgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa > 7:106809‑M2/120‑121 (MQ=255) cgaagatgtttctttcgattcatcatcgtgttgcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTgaga < 6:75335‑M2/36‑1 (MQ=255) gcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa < 1:123572‑M2/2‑1 (MQ=255) gcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaa > 2:123572‑M2/81‑82 (MQ=255) gaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTg < 2:310603‑M2/42‑1 (MQ=255) gaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTg < 2:305339‑M2/42‑1 (MQ=255) gaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTg > 1:305339‑M2/79‑120 (MQ=255) gaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTg > 1:310603‑M2/79‑120 (MQ=255) tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAat < 1:151622‑M2/3‑1 (MQ=255) acaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAatat > 4:48074‑M2/58‑62 (MQ=255) acaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaAatat < 3:48074‑M2/5‑1 (MQ=255) agtgtttcaattttcagcttgatccagatttttaaagagcaAATAtct < 8:324776‑M2/7‑1 (MQ=255) agtgtttcaattttcagcttgatccagatttttaaagagcaAATAtct > 7:324776‑M2/42‑48 (MQ=255) aCCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTa < 2:49739/148‑1 (MQ=31) cTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGt > 8:326028/1‑145 (MQ=11) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGGTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAg > 5:333712/1‑147 (MQ=17) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGaaa > 4:132034/1‑148 (MQ=32) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGaaa > 3:38776/1‑148 (MQ=32) ttAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGaaaaa > 6:167303/1‑146 (MQ=17) tAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGaa < 7:32982/144‑1 (MQ=32) tAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGaa > 8:32982/1‑144 (MQ=32) AATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTg > 2:235944‑M2/1‑74 (MQ=255) AATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTg < 1:235944‑M2/74‑1 (MQ=255) AATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCaaa < 6:107787‑M2/113‑1 (MQ=255) AATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCaaa > 5:107787‑M2/1‑113 (MQ=255) AATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACa < 2:20351‑M2/146‑1 (MQ=255) | AGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACA > NC_000913/4209737‑4210028 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |