New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 341160241 (1.210)7 (0.230) 7/224 2.8 16.4% intergenic (+35/‑51) fis/yhdJ global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent
?NC_000913 = 3411616 34 (1.100)intergenic (+49/‑37) fis/yhdJ global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent
Rejected: Frequency below/above cutoff threshold.

CAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTG  >  NC_000913/3411472‑3411760
                                                                                                                                                |                                                                                                                                                
cAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAagcg                                                                                                                                              <  2:82789‑M2/149‑5 (MQ=255)
 aaTACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTTAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAa                                                                                                                                                 <  7:124746‑M2/145‑2 (MQ=255)
 aaTACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTTAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAa                                                                                                                                                 >  8:124746‑M2/1‑144 (MQ=255)
    acacCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAagcgcctt                                                                                                                                          <  7:121292‑M2/149‑9 (MQ=255)
      acCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAagcgcctttt                                                                                                                                        <  5:40609‑M2/149‑11 (MQ=255)
        ccGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAagcgccttttt                                                                                                                                       <  5:144645‑M2/148‑12 (MQ=255)
         cGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTta                                                                                                                                     >  5:130747/1‑149 (MQ=255)
          gTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTtat                                                                                                                                    <  1:82789/149‑1 (MQ=255)
          gTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTtat                                                                                                                                    <  3:23872/149‑1 (MQ=255)
             gTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAg                                                                                                                                  <  8:121292/148‑1 (MQ=255)
                  cAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTca                                                                                                                            >  5:47690/1‑149 (MQ=255)
                                     tgatgGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAg                                                                                                                                  <  5:36439/124‑1 (MQ=255)
                                     tgatgGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAg                                                                                                                                  >  6:36439/1‑124 (MQ=255)
                                      gatgGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATgag                                                                                                         >  7:137962/1‑148 (MQ=255)
                                           gCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAgg                                                                                                   <  6:130747/149‑1 (MQ=255)
                                                  ccatGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGaa                                                                                            >  3:74352/4‑149 (MQ=255)
                                                   catGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAAc                                                                                           <  4:74352/147‑1 (MQ=255)
                                                   cGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAAc                                                                                           <  8:137962/149‑1 (MQ=255)
                                                               cGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGtt                                                                                 <  6:40609/147‑1 (MQ=255)
                                                                   aaaaaTTGAAAAAATACGGCATTAACTAATTCAGTTTAGCTAAATTCTTGATTAAAAAGGCGCTACTCTTAATGTGGATTTGTCTTTTTTATATTTGTCAGAAAGGGAGTGACCATGATAAGAGGAttt                                                                                               <  4:66101/129‑3 (MQ=255)
                                                                   aaaaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAtgt                                                                                               >  3:66101/1‑129 (MQ=255)
                                                                     aaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAa                                                                                                                                                 <  8:26128‑M2/77‑2 (MQ=255)
                                                                     aaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAa                                                                                                                                                 >  7:26128‑M2/1‑76 (MQ=255)
                                                                               aaTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAtgt                                                                                               <  6:24299/117‑1 (MQ=255)
                                                                               aaTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAtgt                                                                                               >  5:24299/1‑117 (MQ=255)
                                                                                aTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTATAGGTGTcac                                                                                                                           >  5:99554/1‑87 (MQ=255)
                                                                                aTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTATAGGTGTcac                                                                                                                           <  6:99554/87‑1 (MQ=255)
                                                                                 tACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAg                                                                                                                                  >  5:89867/1‑80 (MQ=255)
                                                                                 tACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAg                                                                                                                                  <  6:89867/80‑1 (MQ=255)
                                                                                        tGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTaa                                                                  <  4:66680/137‑1 (MQ=255)
                                                                                        tGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGATaa                                                                  >  3:66680/1‑137 (MQ=255)
                                                                                         gAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAg                                                                                                                       >  2:102100/1‑83 (MQ=255)
                                                                                         gAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAg                                                                                                                       <  1:102100/83‑1 (MQ=255)
                                                                                           aCTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAtg                                                                                                >  6:64071/1‑104 (MQ=255)
                                                                                                   aGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGATCCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATgcgc                                           >  1:181579/1‑149 (MQ=255)
                                                                                                            aaaTGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgatgcccatcatcagcgcagcacgggtct                                  <  7:38963‑M2/149‑113 (MQ=255)
                                                                                                            aaaTGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTACAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTg                                                                               <  6:86801/104‑1 (MQ=255)
                                                                                                            aaaTGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTACAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTg                                                                               >  5:86801/1‑104 (MQ=255)
                                                                                                             aaTGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgatgcccatcatcagcgcagcacgggtctg                                 >  8:38963‑M2/1‑36 (MQ=255)
                                                                                                             aaTGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGaa                                   <  6:144645/147‑1 (MQ=255)
                                                                                                             aaTGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGGGATGCGCTTGCCGAAc                                  <  7:5881/148‑1 (MQ=255)
                                                                                                                     aTTAAAAAGGCGCTACTCGGCATGGGGAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgatgcccatcatcagcgcagcacgggtctggttaccac                         <  7:135027‑M2/149‑122 (MQ=255)
                                                                                                                          aaaGGCGCTACTCGGCATGGGGAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgat                                                            <  2:69892‑M2/109‑87 (MQ=255)
                                                                                                                          aaaGGCGCTACTCGGCATGGGGAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgat                                                            >  1:69892‑M2/1‑23 (MQ=255)
                                                                                                                           aaGGCGCTACTCGGCATGGGGAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgatgcccatcatcagcgcagcacgggtctggttaccacgggtg                    <  5:16698‑M2/148‑127 (MQ=255)
                                                                                                                                  tACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTaaaaa                           <  7:13260/134‑1 (MQ=255)
                                                                                                                                  tACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTaaaaa                           >  8:13260/1‑134 (MQ=255)
                                                                                                                                         cATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCgat     <  6:47690/149‑1 (MQ=255)
                                                                                                                                             gggAagcgcctttttaatcaagcatttagctaacctgaattagttcatgccgtattttttcaattttttacgcagcgtaccacggttgatgcccatcatcagcgcagcacgggtctggttaccacgggtgtattgcatcaccatgtcc  >  8:135027‑M2/1‑4 (MQ=255)
                                                                                                                                                |                                                                                                                                                
CAATACACCCGTGGTAACCAGACCCGTGCTGCGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCATTATTCACGGTGATGCGCTTGCCGAACTTAAAAAGATCCCCGCCGAAAGTGTCGATCTG  >  NC_000913/3411472‑3411760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.