breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT34.6% 93.1 / 74.0 81intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009133,270,0300TC23.5% 62.4 / 17.8 35intergenic (+428/+186)yhaC/rnpBpentapetide repeats‑related protein/RNase P, M1 RNA component
*NC_000913380,0130G.21.7% 59.2 / 14.1 24intergenic (‑132/+56)frmR/yaiOregulator protein that represses frmRAB operon/outer membrane protein

Marginal new junction evidence (lowest skew 10 of 25 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1411899 =110 (1.140)19 (0.240) 13/224 5.3 17.3% coding (50/936 nt) ttcA tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
?NC_000913 = 1434958 92 (1.180)pseudogene (51/51 nt) ttcC pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related
* ? NC_000913 = 416834148 (0.500)8 (0.090) 6/256 8.6 17.1% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 33 (0.370)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =40 (0.410)8 (0.090) 6/256 8.6 16.2% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 = 4168331 46 (0.510)intergenic (+131/‑41) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 = 260267106 (1.110)12 (0.130) 7/274 8.6 10.2% intergenic (‑167/‑121) phoE/proB outer membrane phosphoporin protein E/gamma‑glutamate kinase
?NC_000913 273955 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 2729475 =56 (0.580)8 (0.090) 5/256 9.1 15.9% intergenic (‑31/+141) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 = 4168363 33 (0.370)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 2729443 =40 (0.410)8 (0.090) 5/256 9.1 15.7% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 49 (0.550)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 4542682 =144 (1.490)5 (0.060) 5/258 9.2 3.1% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 173 (1.920)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 1893763120 (1.240)5 (0.050) 5/262 9.3 4.2% intergenic (+52/‑370) yoaB/yoaC putative reactive intermediate deaminase/DUF1889 family protein
?NC_000913 = 1893776 117 (1.280)intergenic (+65/‑357) yoaB/yoaC putative reactive intermediate deaminase/DUF1889 family protein
* ? NC_000913 2477002 =96 (0.990)4 (0.050) 4/252 9.6 4.1% coding (628/936 nt) dsdC dsd operon activator; autorepressor
?NC_000913 2477035 = 101 (1.150)coding (595/936 nt) dsdC dsd operon activator; autorepressor
* ? NC_000913 = 3852131141 (1.460)4 (0.040) 4/258 9.7 2.7% coding (654/1689 nt) ilvB acetolactate synthase 2 large subunit
?NC_000913 = 3852204 155 (1.720)coding (581/1689 nt) ilvB acetolactate synthase 2 large subunit