New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3158891 | 52 (0.770) | 3 (0.050) | 3/248 | NT | 6.0% | intergenic (+7/+36) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
? | NC_000913 | = 3158922 | 45 (0.700) | intergenic (+38/+5) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
CCCACAAATCTATGCTGCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTA > NC_000913/3158779‑3159068 | cccACAAATCTATGCTGCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATAttttt > 8:148516‑M2/1‑144 (MQ=255) acaAATCTATGCTCCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTaa < 7:163410/149‑1 (MQ=255) tATGCTGCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAAc < 1:170162/143‑1 (MQ=255) tATGCTGCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAAc > 2:170162/1‑143 (MQ=255) tgctgcCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAATATCCCCGGCAAC‑TGACACGCTACCGGGGATtttttatcattct > 7:241453‑M2/1‑133 (MQ=255) gctgcCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAAccg > 5:346441/1‑149 (MQ=255) ctgcCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAAccgc < 6:250853/149‑1 (MQ=255) tgcCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAAccgcc > 4:22289/1‑149 (MQ=255) aaaTCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCtt < 3:180061/149‑1 (MQ=255) aTCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTa < 1:300232/149‑1 (MQ=255) aGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCgg < 8:177391/149‑2 (MQ=255) cTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGttt < 1:49627/149‑1 (MQ=255) aCAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTttctt < 8:323895/149‑1 (MQ=255) gagCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGc < 5:259616/149‑1 (MQ=255) ccAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGACGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCAc > 5:212540/1‑148 (MQ=255) cAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCa < 6:212540/149‑1 (MQ=255) aTACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTATCGTGTCA‑GTTGCCGGGGATATTTTTTAAc > 1:230558/1‑112 (MQ=255) aTACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCACGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAAc < 2:230558/112‑1 (MQ=255) cTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCg > 6:354446/1‑149 (MQ=255) tCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGAt > 7:337741/1‑149 (MQ=255) aGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTg > 2:385734/1‑149 (MQ=255) aGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTGTCTTCGCACCAGCATTCACCGGACGCGATTg > 2:263660/1‑149 (MQ=255) gACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATTTTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCg > 2:317098/1‑149 (MQ=255) gACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCg > 2:38298/1‑149 (MQ=255) ttttGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAgac > 1:151721/1‑149 (MQ=255) ttttGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAga < 3:22289/148‑1 (MQ=255) tttGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCGTAAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAgac > 4:6396/1‑148 (MQ=255) tGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAgacgac > 7:265168/1‑149 (MQ=255) aTTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGc > 6:331775/1‑149 (MQ=255) cTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGAtt < 7:390260/131‑1 (MQ=255) cTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGAtt > 8:390260/1‑131 (MQ=255) tGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTa > 2:23801/1‑93 (MQ=255) tGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTa < 1:23801/93‑1 (MQ=255) tGCGCTGCTTGCGTATGTACGCACAATGATAAAAAA‑ATACACCGTAGCGTGTCA‑GTTGCCGGTCATATTTTTTAAAGTACAACCGCCGCAATAGGCCGTTTATAAGCACCACCAATCACCTGACGAGATTTCGTATACGACCCatttat > 6:351294/1‑147 (MQ=255) gcgcTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCttttttt > 4:102837/1‑149 (MQ=255) tgctTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGTGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCg > 6:164987/1‑149 (MQ=255) ctTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTa < 5:351294/149‑1 (MQ=255) gCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAg > 7:59074/1‑147 (MQ=255) cGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCa < 2:151721/148‑1 (MQ=255) tATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGc < 8:59074/149‑1 (MQ=255) tATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGc > 2:264786/1‑149 (MQ=255) tACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCC‑GGTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCt < 3:383/149‑1 (MQ=255) tACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCTCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCt < 6:134453/149‑1 (MQ=255) gAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCt > 7:399502/1‑149 (MQ=255) aaTGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGcgg < 8:261433/149‑3 (MQ=255) tGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATAttttttatcattctgcgtacatacgcaagcagcgcaggcaatcaaaatagtcctgagcatcaagacgcgtattggctctgttagcttcggatttggcagcatagattt < 1:237856‑M2/149‑109 (MQ=255) aTAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATAttttttatcattctgcgtacatacgcaagcagcgcaggcaatcaaaatagtcctgagcatcaagacgcgtattggctctgttagcttcggatttggcagcatagatttgt < 8:29839‑M2/149‑111 (MQ=255) aaaa‑aTCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCa > 8:149581/1‑149 (MQ=255) cGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTCTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCg < 1:26317/149‑1 (MQ=255) gtgtCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCAGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGt > 4:128259/1‑149 (MQ=255) cA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAAc < 1:264786/149‑1 (MQ=255) ttGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGt < 1:282601/100‑1 (MQ=255) ttGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGt > 2:282601/1‑100 (MQ=255) gggATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACgg > 8:182044/1‑149 (MQ=255) ggATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACggg > 2:173596/1‑149 (MQ=255) gATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGt < 8:399502/149‑1 (MQ=255) atatTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCGGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTa < 6:346441/149‑1 (MQ=255) | CCCACAAATCTATGCTGCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCTCAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGATAAAAAA‑ATCCCCGGTAGCGTGTCA‑GTTGCCGGGGATATTTTTTAACGTCCAACCGCCGCTTTAGGCCGTTTCTTCGCACCAGCATTCACCGGACGAGATTGCGTAGACGACGCTTTTTTTGCCGTAGCAGGCGTCTGACGCTGGGTCGCCATCGGCGTATGTTTCGTCAACGCCGGACGGGTA > NC_000913/3158779‑3159068 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |