| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,636,423 | T→C | 48.4% | intergenic (‑56/‑333) | nohQ ← / → ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,636,423 | 0 | T | C | 48.4% | 49.1 / 75.5 | 79 | intergenic (‑56/‑333) | nohQ/ynfO | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin/uncharacterized protein, Qin prophage |
| Reads supporting (aligned to +/- strand): ref base T (20/19); new base C (10/25); total (30/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.97e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGAT > NC_000913/1636275‑1636571 | tCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGt > 8:251817/1‑149 (MQ=40) aGAACGGGCATTCCCTGTTCCTGACAGTTCTGAATGGTACGTATACTCGCACCTAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTc < 4:44707/149‑1 (MQ=255) ttCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTc > 2:376768/1‑149 (MQ=255) ttacTGCCAGTTCTGAATGTTACGGATACTCGCACCTAAAATGTCAGCCAGCTGCTTTTTGTTGACATCCATGGTTCATTACACGGCCAAAAACAGAGAAAGGAAACGACTGAGGACAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTc < 2:84423/144‑1 (MQ=11) cTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCctttc < 5:147119/149‑1 (MQ=255) cTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATCCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCctttc > 6:44836/1‑149 (MQ=255) tGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCctttct > 1:89721/1‑149 (MQ=255) ccAGTTCTGAATGGTCCCGATACTCGCACCGAAAAAGTCAGCCAGCTGCTTTTTGTTGACTTCCAATGTTCATTCCACGGCCAAATACAGAGAAATGAAACGAGAGAGGCCAAT‑AAGCTCGCTTTCAGCACCTGTCGTTTGctttcttt < 6:237630/149‑1 (MQ=11) ccAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCTCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCctttcttt > 5:383508/1‑149 (MQ=255) ccAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCctttcttt > 3:52298/1‑149 (MQ=255) cAGTTCTGAATGGTACGGATACTCGCACCGATAATGTCTGCAAGCTGATTTTTGTTGACTTCCATTGTTCATTCCACGTCCAAAAACAGAGAACGGCAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCctttcttt > 2:275562/1‑148 (MQ=11) ttCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCTCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAg < 6:383508/149‑1 (MQ=255) cttaaTGGTACTGATACTCGCACCTAAAATGTCAGCCTGCTGGTTTTTGTTGACTTCCATTGTTCATTCCACTTCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAgg < 7:153846/145‑1 (MQ=14) tGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTc < 8:389924/134‑1 (MQ=255) tGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTc > 7:389924/1‑134 (MQ=255) aTGGTACGGATACTCGCTCCGAAAATGTCAGCCAGCTTCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTa < 6:40814/149‑1 (MQ=11) gtccGGATACTCGCACCGAAACTGTCAGCCAGCGGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACCGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTAttt < 6:78401/146‑1 (MQ=11) ggaCGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAACACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCACGCTTTCAGCACCTGTCGGTTCCTTTCTATTCAGAGGGTAatt > 6:25510/3‑149 (MQ=11) gTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGTGGGTAttt > 6:204474/1‑149 (MQ=255) gTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTAttt > 6:216963/1‑149 (MQ=12) ggATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCGAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTtaaa > 6:251632/1‑149 (MQ=255) gATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTtaaat < 1:241067/149‑1 (MQ=12) cTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGG‑CCAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATaaaaa < 1:8371/149‑1 (MQ=255) gCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAACACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATaaaaa < 5:263841/147‑1 (MQ=255) gCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAAc < 7:251817/148‑1 (MQ=255) aCCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGGCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACAt > 8:369665/1‑148 (MQ=255) aCCGAAAATGTCACCCAGCTGCTTTTTGGTGACTTCCATTGTTCATTCCACGGCCCAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACAtt < 2:112802/149‑1 (MQ=11) ccGAAAATGTCAGCCATCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGTACAAAAACAGAGTATGGAATCGAAAGAGGCCAAA‑AAGCTCGATTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGTTATTTTAAATAAAAACATTa < 1:380758/149‑1 (MQ=11) cGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGTCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATaaa > 1:341879/1‑149 (MQ=11) cGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATCCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTaa < 5:44836/149‑1 (MQ=255) gaaacggTCAGCCAGCTGCTATTTGTGGACTTCCTTTGTTCATTCCACGGACAAACACTGAGACATGCAACGACAGAGGCCAAC‑ACGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAg < 4:60150/143‑1 (MQ=1) actggcagccagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTa < 8:169777/144‑1 (MQ=1) tCAGCCAGCTGCTTTTTGTTGACTTCGATTGTTCATTCCACGGTCTAAATCTGAGAAAGGAAACTACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTTTTTTAAATAAAATCATTAAGTTatgac < 1:258641/149‑1 (MQ=11) tCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTacgac > 1:364116/1‑149 (MQ=255) gccagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGGCCGAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACgaa < 2:130298/149‑1 (MQ=11) gccagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGG‑CCAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTatgacg > 7:63144/1‑146 (MQ=11) cagcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGATTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACgaaga < 8:313983/149‑1 (MQ=11) agcTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACgaag > 2:384765/1‑147 (MQ=255) agcTGCTTTTTGTTGAACTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTAGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACgaagaa < 8:297019/149‑1 (MQ=11) gtttttGGTGTCTTACATTGTTCATTCCTCGGAGAAATAGAGAGAATGGAAAATACAGAGGCCAAA‑AACCTCGCTTTGTGCTCCTGTGGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGATGAAGAAc < 7:146030/147‑1 (MQ=255) ctatttGTTCACTTCCATTGTTCATTCCACCGACAAAACCAGAGAAACGAAACGACAGAGGCCAAC‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACgaagaagaa < 6:363682/144‑1 (MQ=1) ctTTTTGTTGACTTCCATTGTTCCTTCCACGGCCAAAAACACAGAAAGGAAACGACAGAGGCCAAA‑ACGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGCTATTTTAAATAAAAACATTACGTTATGACgaagaagaa < 4:215376/147‑1 (MQ=11) ctTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACg < 1:384765/149‑1 (MQ=255) ctTTTTGTTGACTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGATTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACg < 1:78433/149‑1 (MQ=11) ttttGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACgg > 2:203603/1‑148 (MQ=255) tttGGTGACTTCCATTCTTCATTCCTCGGAGAAAAACAGAGAAAGGAAACGTCTGTTGCCAAA‑AAGCTCTATTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTAGTTTAAATAAAATCATTAAGTTATGACGAAGAAGAACg < 2:292256/146‑1 (MQ=11) tgttgACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGaaa < 1:280104/148‑1 (MQ=255) tgttgACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGaaa < 2:89721/148‑1 (MQ=255) tctcccATTGTTCATTCCACTGACAAAAACAGAGAACCCCAACGACAGTGGCCAAA‑AAGCTCGCTATCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCtt < 4:302118/145‑1 (MQ=1) aCTTCCATTGTTCATTCCACGGACAAAAACAGTCAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAAAGCCtt < 6:42106/149‑1 (MQ=11) aCTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAATGCCt < 3:94868/148‑1 (MQ=11) aCTTCCATTGTTCATTCCACGGACAAAAACAGAGAAAGGAAACGACAGAGG‑CCAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCtt < 2:62553/148‑1 (MQ=11) tCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCtt > 1:335296/1‑146 (MQ=255) tCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCtt < 2:335296/146‑1 (MQ=255) cATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAAcc > 5:204851/1‑149 (MQ=255) cATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCTTAAAcc > 7:91303/1‑149 (MQ=11) aTTGTTCATTCCACGGTCAAAAACAGAGAAAGGAAACGACATCTGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCTTAAACCg < 6:31553/149‑1 (MQ=11) aTTGTTCATTCCACGGCCAAAAACAGAGACAGGAAACGACAGAGGCCAAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCTTAAACCg < 6:251868/149‑1 (MQ=11) tGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCgg > 4:66417/1‑148 (MQ=255) ttCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGaa > 8:59345/1‑148 (MQ=255) ttCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGGTTTCAGCACCTGGCGGTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGaaa < 6:5456/149‑1 (MQ=255) ccACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAAtttt > 1:21041/1‑148 (MQ=255) ggacAAAATCAGATAAATGAAACGACAGAGTCCAAC‑AAGCTCGCTTTCAGAACCTGTCGTTTACTTTCTTTTCATAGGTTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCTTAAACCTTAAAATTTTCATaa < 3:261272/146‑1 (MQ=255) ggCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATaa < 1:376768/149‑1 (MQ=255) ggCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATa > 1:192156/1‑148 (MQ=255) ccAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAAt < 2:21041/149‑1 (MQ=255) cAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATa < 4:263139/149‑1 (MQ=255) aCAGAGGCCAAA‑ACGCTCGCTTTCCGCGCCTGTCGGGTCCTTTCTTTTCAGCGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCTTAAACCGGAAAATATTCAATAATAGCGAAAACCCGCGACGTcgcc > 8:74781/1‑149 (MQ=255) cttgCCCAA‑AAGCTCGCTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGAGGGTATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAACGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCgccgcc < 3:43886/146‑1 (MQ=11) gagCCCAACAAGCTCGCTATCAGCACCTGTCGTTTACGTTCTTTTGAGAGTGTATTTTAAATAAAAACAATTACTAATGACGAAGAAGAACGGAAAAGCCTTAACCGTTAAAATTTTCATAAATAGCGAAAACCCGCGAGTTcgccggc < 2:241642/147‑3 (MQ=2) agGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGccc < 5:53733/149‑1 (MQ=255) cAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTaa > 8:166212/1‑149 (MQ=40) cAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTaa < 2:16884/149‑1 (MQ=40) cAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTaa > 2:128215/1‑149 (MQ=40) aa‑aaGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAAc < 7:59345/149‑1 (MQ=39) aa‑aaGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAAc < 3:66417/149‑1 (MQ=39) aa‑aaGCCCGCTTTCAGCACATGTCGTTTCCTTTCTTTTCATAGTGTATTTAAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAAAGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAAc < 1:241001/149‑1 (MQ=11) gCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGt > 3:201465/1‑149 (MQ=39) tCGCTTTCAGCACCTGTCGTTTCCATTCTTTTAAGAGGGGATTTTAAATAAAAACATTAAGTTATGACGAAGAAGAACGGAAAAGCCGTAAACCGGAAAATTTAAATAAATAGCGAAACCCCGCGAGGTCGCCGCCCCGTAACCTGTCg > 2:183564/1‑149 (MQ=11) gTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGa > 6:376556/1‑149 (MQ=38) ttttCAGCACCTGTCGTTTCCTTTCTTTTCAGTGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGACTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGATGTCGCCGCCCCGTAACCTGTCGGAt < 5:204474/149‑1 (MQ=255) ttttCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGAt > 2:72504/1‑149 (MQ=38) ttttCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGAt < 1:72504/149‑1 (MQ=38) | TCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACGACAGAGGCCCAA‑AAGCTCGTTTTCAGCACCTGTCGTTTCCTTTCTTTTCAGGGGGTATTTTAAATAAAAACATTAAGTTACGACGAAGAAGAACGGAAATGCCTTAAACCGGAAAATTTTCATAAATAGCGAAAACCCGCGAGGTCGCCGCCCCGTAACCTGTCGGAT > NC_000913/1636275‑1636571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |