New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1972664 =72 (0.800)4 (0.050) 4/238 NT 5.2% coding (28/1662 nt) tar methyl‑accepting chemotaxis protein II
?NC_000913 1972676 = 76 (0.880)coding (16/1662 nt) tar methyl‑accepting chemotaxis protein II

AATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTTCGCGGCGGGTGGCATCAGCAATAAAGTTTCCCCCCTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTAGTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1972813‑1972664
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGA  >  NC_000913/1972676‑1972821
                                                                                                                                                                                                                                                                                                        
AATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTTCGCGGCGGGTGGCATCAGCAATAAAGTTTCCCCCCTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTAGTCAC                                                                                                                                                      >  1:95658/1‑148
                                                                             CTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTGACTACGCGGATACGGTTAATCA                                                                                                                                     >  5:171175/1‑88
                                                                             CTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTGACTACGCGGATACGGTTAATCA                                                                                                                                     <  6:171175/88‑1
                                                                              TCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTGACTACGCGGATACGGTTAATCATA                                                                                                                                   >  7:22436/1‑89
                                                                              TCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTGACTACGCGGATACGGTTAATCATA                                                                                                                                   <  8:22436/89‑1
                                                                                                                                                   CGCTGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAATGAGGGTGGAAACTTTATTGCTGATGCCACCCGCCGCTAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTG   <  3:176404/148‑1
                                                                                                                                                   CGCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTG   <  2:106840/148‑1
                                                                                                                                                    GCGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGA  <  7:128674/148‑1
                                                                                                                                                     CGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTCAAGCCCCCCGCCGCGAAATTGAAATAAAAAACCCctagg                             >  8:89901/1‑115
                                                                                                                                                                                                                                                                                                        
AATGAACCCGATGATCTGCGCATCGGGTTTTTTATTTCAATTTCGCGGCGGGTGGCATCAGCAATAAAGTTTCCCCCCTCCTTGCCGATAACGAGATCAACTTGTTTTCAGGAAGGTGCCTTATGATTAACCGTATCCGCGTAGTCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1972813‑1972664
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcGGATACGGTTAATCATAAGGCACCTTCCTGAAAACAAGTTGATCTCGTTATCGGCAAGGAGGGGGGAAACTTTATTGCTGATGCCACCCGCCGCGAAATTGAAATAAAAAACCCGATGCGCAGATCATCGGGTTCATTTCAATTGA  >  NC_000913/1972676‑1972821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.