Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 564,107 IS2 (+) +5 bp 100% coding (370‑374/633 nt) sfmZ ← response regulator family protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)102 (1.150) 77/244 NT 99.0% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 = 564111 1 (0.010)coding (370/633 nt) sfmZ response regulator family protein
* ? NC_000913 = 382590NA (NA)83 (0.930) 70/246 NT 98.8% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 564107 = 1 (0.010)coding (374/633 nt) sfmZ response regulator family protein

Only 100 of 229 total aligned reads displayed.

AACTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTGC  >  NC_000913/563960‑564254
                                                                                                                                                   |                                                                                                                                                   
aaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                     <  4:328646‑M2/1‑1 (MQ=255)
aaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                     >  8:161098‑M2/148‑148 (MQ=255)
aaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccag                                                                                                                                                     <  3:412318‑M2/1‑1 (MQ=255)
 aCTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACg                                                                                                                                                     <  8:132889/147‑1 (MQ=255)
      tCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAta                                                                                                                                               >  7:304105‑M2/1‑146 (MQ=255)
      ccttgcagaggcgttcgagcattatcacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATc                                                                                                                                               <  2:341203‑M2/7‑1 (MQ=255)
        ggCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtag                                                                                                                                              >  4:88781‑M2/1‑144 (MQ=255)
         tgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCg                                                                                                                                             >  2:152945‑M2/139‑147 (MQ=255)
          cAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagact                                                                                                                                           >  4:267508‑M2/1‑142 (MQ=255)
             tttCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACg                                                                                                                                                     >  5:294845/1‑135 (MQ=255)
             tttCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggc                                                                                                                                        >  1:138365‑M2/1‑139 (MQ=255)
             tttCTTTATTAGATAATCCGCTAACCAGAAAACGTAATCTGGGCACTTCACGATTAGATAGCACATGGACCGATGAACTATTCGTACTACATTTATTGCTTTTTATATATTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggc                                                                                                                                        >  4:413029‑M2/1‑139 (MQ=255)
              ttCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggcc                                                                                                                                       <  7:58063‑M2/148‑11 (MQ=255)
                 tttATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAt                                                                                                                                                <  6:83894‑M2/136‑2 (MQ=255)
                  gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGatca                                                                                                                                   <  7:336160‑M2/19‑1 (MQ=255)
                               aacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCAt                                                                                                                       >  1:413549‑M2/117‑147 (MQ=255)
                                      cAGATAACGTTATATGGTGACTTCTCGATTAGATAGCTCAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaata                                                                                                               >  3:151466‑M2/1‑114 (MQ=255)
                                        catccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATc                                                                                                             <  7:205738‑M2/41‑1 (MQ=255)
                                         atccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCa                                                                                                            <  1:352905‑M2/42‑1 (MQ=255)
                                         aTAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatca                                                                                                            <  4:359035‑M2/148‑38 (MQ=255)
                                          tAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACgtgt                                                                                                                                                  <  4:146426/109‑1 (MQ=255)
                                          tAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACgtgt                                                                                                                                                  >  3:146426/1‑109 (MQ=255)
                                          tAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcac                                                                                                           <  7:285517‑M2/148‑39 (MQ=255)
                                              catagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCt                                                                                                        >  7:364925‑M2/102‑147 (MQ=255)
                                                tagtgcgctgggttatcgctcgccacgggaatatctgctgcagcgggcgtgtaatgggataagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGAt                                                                                                     <  3:102521‑M2/49‑1 (MQ=255)
                                                aaTATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaa                                                                                                      <  7:428517‑M2/147‑44 (MQ=255)
                                                 atatGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaata                                                                                                    >  3:359035‑M2/1‑103 (MQ=255)
                                                 agtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGAt                                                                                                     >  5:305816‑M2/99‑147 (MQ=255)
                                                  gtgcgctgggttatcgctctccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAAAATCATTCTGATc                                                                                                    <  5:422192‑M2/50‑1 (MQ=255)
                                                    tGGTCACTTCACGATTAGATAGCACAGTGACCGTTGATCTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacatccaatatcacttaaataag                                                                                                  >  4:292667‑M2/1‑100 (MQ=255)
                                                    tGGTCAATTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataag                                                                                                  >  7:182358‑M2/1‑100 (MQ=255)
                                                    gcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCAtt                                                                                                 >  2:253502‑M2/96‑148 (MQ=255)
                                                     cgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCTTTCTGATCATTg                                                                                                <  4:218114‑M2/54‑1 (MQ=255)
                                                     cgctgggttatcgctcgccacgggaatatctgaggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTg                                                                                                >  6:205247‑M2/95‑148 (MQ=255)
                                                         aCTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtaga                                                                                                                                             <  5:386914‑M2/99‑5 (MQ=255)
                                                         aCTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtaga                                                                                                                                             >  6:386914‑M2/1‑95 (MQ=255)
                                                           ttCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtc                                                                                          >  8:180823‑M2/1‑93 (MQ=255)
                                                            tCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtaga                                                                                                                                             >  8:344737‑M2/1‑92 (MQ=255)
                                                             cACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTAGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtct                                                                                         <  4:379291‑M2/147‑57 (MQ=255)
                                                              aCGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                                                                        >  4:130046‑M2/1‑90 (MQ=255)
                                                              aCGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatc                                                                                                             >  1:167924‑M2/1‑90 (MQ=255)
                                                               cGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaa                                                                                      >  3:401378‑M2/1‑89 (MQ=255)
                                                                gATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaat                                                                                     >  8:58063‑M2/1‑88 (MQ=255)
                                                                cgctcgccacgcgaatatctgcggcagcgggcttgttatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGTCATGAAAAATTTCATTCTGATCATATCATTTACTGa                                                                                      >  5:179963‑M2/84‑147 (MQ=255)
                                                                 aTTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaata                                                                                    <  7:106440‑M2/148‑62 (MQ=255)
                                                                      ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACaaa                                                                                  <  4:56003‑M2/68‑1 (MQ=255)
                                                                      ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACaaa                                                                                  >  3:56003‑M2/78‑145 (MQ=255)
                                                                        acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGt                                                                             >  3:99149‑M2/76‑148 (MQ=255)
                                                                        acgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGt                                                                             <  3:65106‑M2/73‑1 (MQ=255)
                                                                          cacaGTGACCGTTGAACTATTCCTACTACAATTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTCTAtagcctggccccctgaatctccagacaaccaatatcacttacataagagatagtcttaatactagttttt                                                                           >  2:127708‑M2/1‑78 (MQ=255)
                                                                           acaGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttt                                                                            <  5:257197‑M2/146‑70 (MQ=255)
                                                                            caGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttag                                                                         >  8:428517‑M2/1‑76 (MQ=255)
                                                                                  ctgcggcagcgggcttgtaatgggttaattgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCAttt                                                                                           <  1:67805‑M2/59‑1 (MQ=255)
                                                                                  ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCAttt                                                                                           >  2:67805‑M2/66‑124 (MQ=255)
                                                                                  ctgcggcagcgggcttgtaatgggttaagtgataacagaggtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCGGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCCCCAGc                                                                   >  6:240843‑M2/66‑148 (MQ=255)
                                                                                    gTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtca                                                                 <  2:172528‑M2/148‑81 (MQ=255)
                                                                                    gTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtca                                                                 >  2:228863‑M2/1‑68 (MQ=255)
                                                                                     ttGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcat                                                                >  8:105515‑M2/1‑67 (MQ=255)
                                                                                      tGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                                                                        >  8:300458‑M2/1‑66 (MQ=255)
                                                                                      tGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtctt                                                                                        <  7:300458‑M2/123‑58 (MQ=255)
                                                                                         aCTATTCGTACTACATTTATTGGTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatctcacttaaataagtgatagtgttaattctagtttttagactagtcattgg                                                             >  1:420214‑M2/1‑63 (MQ=255)
                                                                                          gcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCg                                                           <  3:191396‑M2/91‑1 (MQ=255)
                                                                                            gggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCACCTTGTATCGct                                                         <  6:314498‑M2/93‑1 (MQ=255)
                                                                                             ttCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaa                                                         >  6:257197‑M2/1‑59 (MQ=255)
                                                                                             ttCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggaga                                                          <  6:27538‑M2/146‑88 (MQ=255)
                                                                                             ttCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaata                                                                                                    <  8:186657‑M2/104‑46 (MQ=255)
                                                                                             ttCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaata                                                                                                    >  7:186657‑M2/1‑59 (MQ=255)
                                                                                                 tgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCAt                                                                                             >  8:107585‑M2/51‑107 (MQ=255)
                                                                                                 tgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGCCAAAACCGTTAGCACCAGCTTGTATCGCTCTGc                                                     >  7:348635‑M2/51‑147 (MQ=255)
                                                                                                 tactacATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagat                                                    <  5:365638‑M2/148‑94 (MQ=255)
                                                                                                  gtattgggttaagtgctcacagatgtctggatatatagtggcaaatccaGTGTATCCGGAGAGTATCATCTGAACGTCTTTAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGcc                                                    <  6:179963‑M2/98‑1 (MQ=255)
                                                                                                  gtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGctc                                                        >  3:239468‑M2/50‑143 (MQ=255)
                                                                                                   ctacATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatga                                                  <  7:73797‑M2/148‑96 (MQ=255)
                                                                                                    tacATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgat                                                 <  5:86576‑M2/148‑97 (MQ=255)
                                                                                                      tgggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCa                                                >  7:161244‑M2/46‑147 (MQ=255)
                                                                                                      cATTTATTGCTTTTTATATAGTTCAGCGTTTCGCTGGGAAACAACGGGTAtagacttgccccctgcatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtatttagactagtcattggagaacagatgattg                                               >  6:4073‑M2/1‑50 (MQ=255)
                                                                                                      cATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattg                                               >  7:131695‑M2/1‑50 (MQ=255)
                                                                                                       ctttaTTGCGTTTTATATAGTTAAGCCGTTCTCTGGGAAAAAAAGTGTAtagactggcaccctgaatctccagacacccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattga                                              >  5:168229‑M2/2‑49 (MQ=255)
                                                                                                        ggttaagtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATa                                              <  8:277585‑M2/104‑1 (MQ=255)
                                                                                                              gtgataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCAt                                       <  8:323542‑M2/111‑1 (MQ=255)
                                                                                                              gCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctt                                        >  3:289627‑M2/1‑42 (MQ=255)
                                                                                                              gCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctt                                        >  1:259131‑M2/1‑42 (MQ=255)
                                                                                                                tttttATATAGTTAAGCGTTTCGCTGGGAAAAATCGTGTAtagactggcgccatgaatctccagacaaccaaaatcacttaaataagtgattgtcttaatactagttttt                                                                           <  5:118019‑M2/110‑71 (MQ=255)
                                                                                                                tttttATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg                                     <  3:134708‑M2/148‑109 (MQ=255)
                                                                                                                 ataacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTc                                     <  1:244056‑M2/113‑1 (MQ=255)
                                                                                                                  tttATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg                                     >  1:172528‑M2/1‑38 (MQ=255)
                                                                                                                   aacagatgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGa                                  >  7:254362‑M2/33‑148 (MQ=255)
                                                                                                                        atgtctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCg                             <  5:205247‑M2/121‑1 (MQ=255)
                                                                                                                          gTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaa                           <  2:442519‑M2/148‑119 (MQ=255)
                                                                                                                          gTTAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaa                           <  1:212284‑M2/148‑119 (MQ=255)
                                                                                                                           tctggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgat                           <  7:444753‑M2/123‑1 (MQ=255)
                                                                                                                            tAAGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacatatgattgatgtcttagggccggagaaacg                         <  4:287144‑M2/148‑121 (MQ=255)
                                                                                                                              ggaaatataggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCgatgat                        >  1:11366‑M2/22‑147 (MQ=255)
                                                                                                                              aGCGTTTCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgc                        >  8:378714‑M2/1‑26 (MQ=255)
                                                                                                                                   ttCGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgat                                                                                              <  5:262565‑M2/72‑52 (MQ=255)
                                                                                                                                     cGCTGGGAAAAAACGTGTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggc                 >  3:29290‑M2/1‑19 (MQ=255)
                                                                                                                                       ggggcaaatccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAaca              <  3:321793‑M2/136‑1 (MQ=255)
                                                                                                                                              atccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCAc       >  2:413942‑M2/6‑148 (MQ=255)
                                                                                                                                              atccaGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCAc       >  4:189260‑M2/6‑148 (MQ=255)
                                                                                                                                                 caGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACtgt    <  6:136737‑M2/146‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AACTTATCGGCAATTTCTTTATTAGATAATCCGCTAACCAGATAACGTAATATGGTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACCGTTAGCACCAGCTTGTATCGCTCTGCCAGCATAAAAGCATTCTGATTTCGATGATAAAAATAACACTTTCACTGTGC  >  NC_000913/563960‑564254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.