BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4003233 =	87 (0.970)	4 (0.050)	4/230	NT	4.8%	intergenic (‑40/+55)	yigG/rarD	PRK11371 family inner membrane protein/putative chloramphenical resistance permease
*	?	NC_000913	4003267 =	76 (0.910)	4 (0.050)	4/230	NT	4.8%	intergenic (‑74/+21)	yigG/rarD	PRK11371 family inner membrane protein/putative chloramphenical resistance permease
Rejected: Frequency below/above cutoff threshold.

Only 100 of 119 total aligned reads displayed.

TTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAG  >  NC_000913/4003121‑4003413

ttaAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATAttt                                                                                                                                                    <  1:368785/147‑1 (MQ=255)

   aaataaatGAAACTATATCACCACCTCTGGAAATCTTACCGTAAGATGTGTGCATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTc                                                                                                                                                <  4:32364/148‑1 (MQ=255)

   aaataaatGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATAtttttt                                                                                                                                                 <  3:340250/147‑1 (MQ=255)

    aataaatGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATAtttttt                                                                                                                                                 >  4:24836/1‑146 (MQ=255)

      taaatGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTAACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGa                                                                                                                                             <  1:379513/148‑1 (MQ=255)

             aaaTATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGAATGGCAATATGCCAACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATAtatt                                                                                                                                      >  5:263808/1‑148 (MQ=255)

              aaTATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATAtatt                                                                                                                                      >  1:49512/1‑147 (MQ=255)

                    taACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATAtttattttt                                                                                                                               <  8:41745/148‑1 (MQ=255)

                     aaCGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGACAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATAtttattttt                                                                                                                               >  7:427529/1‑147 (MQ=255)

                      acgacgTCTGGAAATCTTAGCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACCGCCTTGTATGAGTCTCCGGTCAGGATGGCCATATGCACCCGCTCATGATAGAGTCGGCAGATTTTTTCAGAAGATAtttttttttta                                                                                                                             >  2:325321/1‑148 (MQ=255)

                       ttatttgggtggcgctggcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaaatatgcccactctcatgcaagagtcggcatattTTTTCAGAATATAtttattttttat                                                                                                                            >  2:440812‑M2/124‑148 (MQ=255)

                       cgacgTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTAAATCCTTGTATGAGTCGCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATTTAttgattttttag                                                                                                                            >  8:381556/1‑147 (MQ=255)

                            tCTTGATATCTTACCGTTAGATGTTGGGCTAAATATACTTAACATAAACTTTACATCCTTGTATTATTCTCCGGTCAGCATTGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGa                                                                                                                       <  1:432174/148‑1 (MQ=255)

                            tCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGa                                                                                                                       <  2:203442/148‑1 (MQ=255)

                             cTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGAc                                                                                                                      >  4:181653/1‑148 (MQ=255)

                               ggAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                                                    >  1:178393/1‑148 (MQ=255)

                                taaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                                                    <  3:95360/146‑1 (MQ=255)

                                gAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTTTATTAGTCTCCGGTCATCATGGCTATATGCCCACTCTCATGCAAGTGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                                                    <  1:93834/147‑1 (MQ=255)

                                gAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGt                                                                                                                    <  2:96036/147‑1 (MQ=255)

                                 aaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATAtattta                                                                                                                                    >  4:302879/1‑130 (MQ=255)

                                 aaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTc                                                                                                                  <  2:291344/148‑1 (MQ=255)

                                 aaaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTc                                                                                                                  >  4:367447/1‑148 (MQ=255)

                                  aaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCt                                                                                                                 <  1:386432/148‑1 (MQ=255)

                                  aaTCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCt                                                                                                                 <  3:181653/148‑1 (MQ=255)

                                        gcaatttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaaatatgcccactctcatccaagagtcggcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTg                                                                                                           <  1:440812‑M2/42‑1 (MQ=255)

                                          cGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCg                                                                                                         >  7:153795/1‑148 (MQ=255)

                                             ttttgtgatggatgcgatttatacgcagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGCCCACTCTCATGCAAGAGTCGGCATAtttttt                                                                                                                                                 <  2:384258‑M1/38‑1 (MQ=255)

                                             tAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCCGCGta                                                                                                       >  6:179667/1‑147 (MQ=255)

                                                      ggATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGcat                                                                                             <  1:64345/148‑1 (MQ=255)

                                                         tAAATATACGTAACATAAATTTTACATCCTTTTAGGAGTCTCCGGTCAGAATGGAAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACTCTGCGTATAAATCGcatcca                                                                                          <  3:226730/148‑1 (MQ=255)

                                                         tAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGcatcca                                                                                          >  8:217790/1‑148 (MQ=255)

                                                             tataCGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATca                                                                                       >  8:115996/1‑147 (MQ=255)

                                                                 cGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGa                                                                                                                                             >  5:353600/1‑89 (MQ=255)

                                                                 cGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGa                                                                                                                                             <  6:353600/89‑1 (MQ=255)

                                                                   tAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAAt                                                                                <  2:49512/148‑1 (MQ=255)

                                                                     aCATAAATTTTACATCCTTGTATGAGTCTCCGCTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTg                                                                              <  2:398363/148‑1 (MQ=255)

                                                                     aCAAAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTg                                                                              >  8:197224/1‑148 (MQ=255)

                                                                      cagcgtagaacgtccaaataaaaaataaatatattctgaaaaAATATGCCGACTCTTGGATGAGAGTGGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGc                                                                             <  1:440812‑M1/106‑1 (MQ=255)

                                                                      cATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGc                                                                             >  1:400227/1‑148 (MQ=255)

                                                                      cATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGc                                                                             <  3:392931/148‑1 (MQ=255)

                                                                       aaaaaTTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGcc                                                                            <  7:197224/146‑1 (MQ=255)

                                                                        tAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCCGCGTATAAATCGCATCCATCACAAAAATTGCCa                                                                           <  5:179667/148‑1 (MQ=255)

                                                                           aTTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAgcg                                                                        <  6:71979/148‑1 (MQ=255)

                                                                              ttACATCCTTGTATGAGTCTCCGGTCAGCATGACAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGcc                                                                      <  8:427529/147‑1 (MQ=255)

                                                                                      ttGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATAATTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCCTCCATCACAAAAATTGCCAGCGCCACCCAAATa                                                             <  3:307350/148‑1 (MQ=255)

                                                                                       tGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTATCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATACATCACAAAAATTGCCAGCGCCACCCAAATa                                                             >  7:282535/1‑147 (MQ=255)

                                                                                       ataaaaaataaatatattctgaaaaAATATGCCGACTCTTGCATGAGAGTGGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaa                                                            >  2:440812‑M1/26‑148 (MQ=255)

                                                                                        gTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaa                                                            <  8:329266/147‑1 (MQ=255)

                                                                                         tATGAGTCTACGGTCAGCATGGCAATATGCCCACTCTCATGCAAGACTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAg                                                          <  6:91916/148‑1 (MQ=255)

                                                                                          aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCa                                                                     <  8:288731/136‑1 (MQ=255)

                                                                                          aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCa                                                                     >  7:288731/1‑136 (MQ=255)

                                                                                          aTGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGAAGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAgg                                                         >  1:193099/1‑148 (MQ=255)

                                                                                                  ccGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGt                                                  >  1:245813/1‑147 (MQ=255)

                                                                                                      tCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCa                                             >  7:271911/1‑148 (MQ=255)

                                                                                                        aGCATGGCAATATGCCCACTCTCATTCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCAACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGTCGAAAGTCACCAt                                            <  2:162641/147‑1 (MQ=255)

                                                                                                            aaaaaatatgccgactcttgcatgagagtgggcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACaaaa                                                                                  >  1:384258‑M2/39‑105 (MQ=255)

                                                                                                            aaaaaatatgccgactcttgcatgagagtgggcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACaaaa                                                                                  <  2:384258‑M2/67‑1 (MQ=255)

                                                                                                             ggCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc                                      >  1:412686/1‑148 (MQ=255)

                                                                                                                 ATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc                                      <  7:93288‑M1/144‑1 (MQ=255)

                                                                                                                 ATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATc                                      >  8:93288‑M1/1‑144 (MQ=255)

                                                                                                                  TATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCAc                                 <  7:192429‑M1/148‑1 (MQ=255)

                                                                                                                   ATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCAcc                                <  7:50900‑M1/148‑1 (MQ=255)

                                                                                                                   ATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCAcc                                <  3:125369‑M1/148‑1 (MQ=255)

                                                                                                                    tgaccACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCAcc                                <  2:193099/144‑1 (MQ=255)

                                                                                                                          ctctCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTTTTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAATATTGCCAGCGCCCCCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGtttt                         >  7:137289/1‑148 (MQ=255)

                                                                                                                          ctctCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGtttt                         <  8:192429/148‑1 (MQ=255)

                                                                                                                            ctcATGCAAGAGTCTGCATATTTTTTAAGAATATATATATTTTTTATTTGGACGTTATACGCTGCGTATAAATCGCATACATCACAAAAATTGCAAGCGCCACCCAAATAAAGGCTAAAGTCACCAACTTATAGGCACCCGGttttt                        >  3:116194/1‑147 (MQ=255)

                                                                                                                            ctcATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaaa                                                           >  7:220662/1‑112 (MQ=255)

                                                                                                                            ctcATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaaa                                                           <  8:220662/112‑1 (MQ=255)

                                                                                                                            ctcATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGttttt                        >  3:148342/1‑147 (MQ=255)

                                                                                                                            ctcATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGttttt                        >  3:220685/1‑147 (MQ=255)

                                                                                                                            ctcATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGttttt                        >  8:199388/1‑147 (MQ=255)

                                                                                                                              cATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaa                                                            <  8:275705/109‑1 (MQ=255)

                                                                                                                              cATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATaa                                                            >  7:275705/1‑109 (MQ=255)

                                                                                                                               aTGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGATAGTCACCATCTTATCGGCACCCGGTTTTTc                       <  6:263808/145‑1 (MQ=255)

                                                                                                                               aTGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTc                       <  3:367447/145‑1 (MQ=255)

                                                                                                                               aTGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTc                       <  2:178393/145‑1 (MQ=255)

                                                                                                                                 gCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCAGCACAAAAATTGCCAGCGCCACCCAATTAAAGGCGAAAGTCACCATCTTATCGGCCCCCGGTTTTTCACCa                   >  2:211556/1‑147 (MQ=255)

                                                                                                                                    agagTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATaaa               <  6:134410/148‑1 (MQ=255)

                                                                                                                                         cGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTc          >  3:196081/1‑148 (MQ=255)

                                                                                                                                          ggcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTca         <  1:438309‑M2/140‑1 (MQ=255)

                                                                                                                                          ggcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTc          <  8:50900‑M2/139‑1 (MQ=255)

                                                                                                                                          ggcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTc          <  4:125369‑M2/139‑1 (MQ=255)

                                                                                                                                           gcatattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTcac        <  7:115996‑M2/141‑1 (MQ=255)

                                                                                                                                             atattTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcag      >  8:284225‑M2/6‑148 (MQ=255)

                                                                                                                                             atattTTTTCAGAATATATTTATTTTTAAATTGGACGTGCTACGCTTCCTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAACTAAAGGCGAAAGTCTCCATCTTAGCGGCACCCGGTTTTTCCCCATAAAACGTCAcag      <  8:149914‑M2/143‑1 (MQ=255)

                                                                                                                                               attTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGaa                                                     >  1:309904‑M2/4‑99 (MQ=255)

                                                                                                                                               attTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGaa                                                     <  2:309904‑M2/96‑1 (MQ=255)

                                                                                                                                               attTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTc          >  4:170875‑M2/4‑142 (MQ=255)

                                                                                                                                               attTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagcc    >  3:365409‑M2/4‑148 (MQ=255)

                                                                                                                                               attTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagc     >  2:98610‑M2/4‑147 (MQ=255)

                                                                                                                                                ttTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagcc    <  4:345120‑M2/145‑1 (MQ=255)

                                                                                                                                                ttTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagc     >  6:328167‑M2/3‑146 (MQ=255)

                                                                                                                                                 tTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAAt                                                              <  4:17251‑M2/87‑1 (MQ=255)

                                                                                                                                                 tTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAAt                                                              >  3:17251‑M2/2‑88 (MQ=255)

                                                                                                                                                 tTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATa                                                             <  2:433541‑M2/88‑1 (MQ=255)

                                                                                                                                                 tTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAg                                                          <  8:290835‑M2/91‑1 (MQ=255)

                                                                                                                                                 tTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCa                                  >  7:116599‑M2/2‑116 (MQ=255)

                                                                                                                                                 tTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCa                                  <  8:116599‑M2/115‑1 (MQ=255)

                                                                                                                                                  ttttCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCAcagccag  <  3:181661/147‑1 (MQ=255)

TTAAAATAAATGAAAATATATAACGACGTCTGGAAATCTTACCGTTAGATGTTGGGATAAATATACGTAACATAAATTTTACATCCTTGTATGAGTCTCCGGTCAGCATGGCAATATGCCCACTCTCATGCAAGAGTCGGCATATTTTTTCAGAATATATTTATTTTTTATTTGGACGTTCTACGCTGCGTATAAATCGCATCCATCACAAAAATTGCCAGCGCCACCCAAATAAAGGCGAAAGTCACCATCTTATCGGCACCCGGTTTTTCACCATAAAACGTCACAGCCAG  >  NC_000913/4003121‑4003413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.