| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2756102 = | 155 (1.410) | 5 (0.050) | 5/254 | 6.4 | 3.5% | intergenic (+724/‑57) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase |
| ? | NC_000913 | 2756141 = | 134 (1.320) | intergenic (+763/‑18) | smpB/intA | tmRNA‑binding trans‑translation protein/CP4‑57 prophage; integrase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2756258‑2756102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggcctaAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTG > NC_000913/2756141‑2756286 ACAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGT < 1:194091/149‑1 CAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGTAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTT > 7:78274/1‑149 GAGTAATCCCGGCACCGTCATAAAGCTGGTAATCGGCAGCTTTAGGTTGGGCGGCTTTGATTTCCTTATAAGTTACAGGCTTGGTTTTTCTTGACATTTGGCGTCTCACTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGG < 5:219579/149‑1 GAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTCGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCGGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGG > 6:245561/1‑149 GTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGC < 2:240192/149‑1 TAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTACGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGTGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCC > 7:335407/1‑149 CTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGC < 6:216809/126‑1 CTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGC > 5:216809/1‑126 AATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTG > 8:210492/1‑118 AATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTG < 7:210492/118‑1 TGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCCGGGAGACTCCCCATGGCAAGAACAACCAAGCCGTTAACTGATACGGAAATCAACGCCGCCCACCCTAACGATGCCGATTACCAGCTTTAGGACGGTGA > 5:242297/1‑149 TGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTG < 8:64023/39‑1 GCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAA > 3:175018/1‑90 GCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCAGTTAACTGATACGGAA < 4:175018/90‑1 CCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACT > 6:45038/1‑149 AACGTAAACAATAGAGCTTTTCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTG < 5:45038/149‑1 CGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGT < 6:444204/149‑1 GTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAACGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGT > 5:371496/1‑148 GGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTG > 4:92990/1‑123 GGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTG < 3:92990/123‑1 GCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTT > 7:280813/1‑149 CCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCA < 4:239171/140‑1 CCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCA > 3:239171/1‑140 CTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTG < 3:156396/149‑1 AAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTC > 7:294865/1‑129 AAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTC < 8:294865/129‑1 ACAGAGTAAGCCCGTCACCGTCATAAAGCTGGTAATCGGCATCTTTAGGTTTGGCGGCTTTGATTTCCGTATCAGTTAACGGCTTGGTTTTTCTTGCCATGGGGAGTCTCCCTGCGTTTAGGCCCAACGTAAACAATAGAGCTTTTCGTTGGGCCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2756258‑2756102‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggcctaAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGACGGGCTTACTCTGTTAATCAAGTCCAGTGGCAGTAAGCTTTG > NC_000913/2756141‑2756286 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |