New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4608119 =	27 (0.780)	4 (0.120)	4/258	4.0	12.7%	coding (317/414 nt)	holD	DNA polymerase III, psi subunit
	?	NC_000913	4608161 =	29 (0.870)					coding (359/414 nt)	holD	DNA polymerase III, psi subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGACGCCAGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGAGTGAAAAAACGTTTGCCAGC  >  NC_000913/4608014‑4608286                                                                                                                                                    |                                                                                                                              tGACGCCAGAAAAAATCGCGATGCTGCCACAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCcgcg                                                                                                                              >  4:39230/1‑149 (MQ=255)      ccAGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATg                                                                                                                         <  3:46545/149‑1 (MQ=255)          aaaaaaTCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGcaa                                                                                                                     <  1:13725/149‑1 (MQ=255)                  gcgATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCGCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAAttt                                                                                                              <  8:84979/148‑1 (MQ=255)                             gCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAac                                                                                                  <  6:135115/149‑1 (MQ=255)                                        aCTGCAACAGTTGGCGTTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTAACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGATATGGCAACAAATTTGAACATATGAACACGCTttcttc                                                                                       >  4:118568/1‑149 (MQ=255)                                             aaCAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTc                                                                                   >  4:106773/1‑148 (MQ=255)                                             aaCAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCg                                                                                  <  3:106773/149‑1 (MQ=255)                                                            ggTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATgg                                                                                                                        <  3:140442/96‑1 (MQ=255)                                                            ggTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATgg                                                                                                                        >  4:140442/1‑96 (MQ=255)                                                                              tCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATttctt                                                                                        <  6:51895/110‑1 (MQ=255)                                                                              tCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATttctt                                                                                        >  5:51895/1‑110 (MQ=255)                                                                              tCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAc                                                                              <  5:112675/120‑1 (MQ=255)                                                                              tCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAc                                                                              >  6:112675/1‑120 (MQ=255)                                                                                aCTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAc                                                                              >  3:26563/1‑118 (MQ=255)                                                                                aCTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAAc                                                                              <  4:26563/118‑1 (MQ=255)                                                                                aCTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACAt                                                   >  6:39317/1‑145 (MQ=255)                                                                                aCTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACAt                                                   <  5:39317/145‑1 (MQ=255)                                                                                  tGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACAtt                                                  >  1:74717/1‑144 (MQ=255)                                                                                  tGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACAtt                                                  <  2:74717/144‑1 (MQ=255)                                                                                          gcTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGccc                                     >  5:145830/1‑149 (MQ=255)                                                                                                         ccGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACTACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGa                      <  3:39230/149‑1 (MQ=255)                                                                                                         ccGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGa                      <  6:145830/149‑1 (MQ=255)                                                                                                           ggCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGAGt                    >  8:88379/1‑149 (MQ=255)                                                                                                                tCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGAGTGaaa                >  6:46600/1‑148 (MQ=255)                                                                                                                       tttACTGGCAAACCCATCGGCACGCGCCGCGTTATTGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGAGGCTTACCAGATTGAACAACGCGCCCACGCCTTTCCGTGGAGTGAAAAAACGttt        <  3:118568/149‑1 (MQ=255)                                                                                                                            gggCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGAt                                                                       <  5:75967/81‑1 (MQ=255)                                                                                                                            gggCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGAt                                                                       >  6:75967/1‑81 (MQ=255)                                                                                                                              gCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGAGTGAAAAAACGTTTGCCAGc  >  6:81981/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                              TGACGCCAGAAAAAATCGCGATGCTGCCGCAAGGCAGTCACTGCAACAGTTGGCGGTTGGGTACTGACGAACCGCTATCACTGGAAGGCGCTCAGGTGGCATCACCGGCGCTCACCGATTTACGGGCAAACCCAACGGCACGCGCCGCGTTATGGCAACAAATTTGCACATATGAACACGATTTCTTCCCTCGAAACGACTGATTTACCGGCGGCTTACCACATTGAACAACGCGCCCACGCCTTTCCGTGGAGTGAAAAAACGTTTGCCAGC  >  NC_000913/4608014‑4608286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.