New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 5929651 (1.120)3 (0.080) 3/248 6.4 6.3% intergenic (+17/+391) yabP/rluA pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
?NC_000913 = 59302 45 (1.130)intergenic (+23/+385) yabP/rluA pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGC  >  NC_000913/59163‑59439
                                                                                                                                            |                                                                                                                                         
aataaAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTACTACTGAAGAAGTTGCTACTAAAAAAGAACTGCTGAACAAATTACTGACAACGCAAATATTGAATGAGCCAGAATAAGCTAAGGACGAAGGGGCTGGAACGcc                                                                                                                                        >  2:344344/1‑143 (MQ=255)
 ataaAATCCCCCGCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATGGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGccc                                                                                                                                       <  2:143471/143‑1 (MQ=255)
  taaAATCCCCCCCAAAAAAATTGGTACTAAAGGGGTGGCTAGTGAAGAGGTTGCTACTAAAAAAGTATTGCATAATTAATTACTGACGACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGcccc                                                                                                                                      <  2:671973/143‑1 (MQ=255)
   aaaaTCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCt                                                                                                                                     >  1:159946/1‑143 (MQ=255)
   aaaaTCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCt                                                                                                                                     >  1:296429/1‑143 (MQ=255)
       tCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCaa                                                                                                                                 <  1:411868/143‑1 (MQ=255)
            cccAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCGTTCCAGCCCCTTCAACCTTa                                                                                                                            <  1:158826/143‑1 (MQ=38)
                             tAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGgatga                                                                                                           <  1:211340/143‑1 (MQ=255)
                             tAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAAGTATTGAATGAGCCAGAATAAGCTGAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGGGGgatga                                                                                                           >  1:408025/1‑143 (MQ=255)
                                     ttGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACaa                                                                                                   <  1:536783/143‑1 (MQ=255)
                                       gCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAAtt                                                                                                 <  1:627069/143‑1 (MQ=255)
                                         tACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACATTAGCAGTAGCGTGGGATGATTTCACAATTAg                                                                                               >  1:115820/1‑143 (MQ=255)
                                          agtggagaagTTGCTCCAGAAGGAGTACGGGGGAACAAGTTACTGACAACGCAATTATTGAATGAGCCCGAATAGGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAGCCTTAGCAGTAGCGTGGGATGATTTCACAATTAGa                                                                                              <  2:4185/138‑1 (MQ=255)
                                          aCTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGa                                                                                              <  1:542027/143‑1 (MQ=255)
                                           cgtaagaagTTGCTACTAAAAAAGTACTGCTGGACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGaa                                                                                             <  1:342603/140‑1 (MQ=255)
                                           cTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGATGGAGGGGCTGGAACGCCCCTTCAACCTTAGCCGTAGCGTGGGATGAATTCACAATTAGaa                                                                                             >  2:466722/1‑143 (MQ=255)
                                              aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGCATGAGCCAGAATAATCTAAGGTGGAAGGGGCTGGAACGACCCTTCAACCTTAGCAGTAGCGAGGGAGGAGGTCACAATTAGAAAGa                                                                                          >  2:736947/1‑143 (MQ=255)
                                              aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGa                                                                                          >  2:797329/1‑143 (MQ=255)
                                              aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGa                                                                                          >  1:59111/1‑143 (MQ=255)
                                              aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGGGGGATGATTTCACAATTAGaagca                                                                                          >  1:754914/1‑140 (MQ=255)
                                              aagaagTTGCTACTAAAAAAGTACTGCTGAACAAATTACAGAGAACGCAACAATCGAATGAGCCAGAATAAGCTAAGACTGAAGGGGCTGGAACGCCCCGTCAACATTAGCACTGGCGAGGGGTGACGTCACAATCAGAAAGa                                                                                          >  2:822787/1‑143 (MQ=255)
                                                 aagTTTCTACGAAAAAAATACTGCTGAACAAATTACTGACAACGCAATTATTCAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCt                                                                                       <  2:250281/143‑1 (MQ=255)
                                                 aagTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCt                                                                                       <  1:151965/143‑1 (MQ=255)
                                                   gtggcgactaAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCGAAGGTGGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGc                                                                                     <  2:105050/137‑1 (MQ=255)
                                                    ttGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAAACTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCa                                                                                    <  2:36329/143‑1 (MQ=255)
                                                           taAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAg                                                                             >  1:43763/1‑143 (MQ=255)
                                                           taAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAACCAAAATAAGCTAAGGTAGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTGCACAATTAGAACGACCTGCATGATGAg                                                                             >  2:176925/1‑143 (MQ=255)
                                                             aaaaaGTACTGCTGAACAAATCACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGATGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGGTGAGCt                                                                           >  2:23445/1‑143 (MQ=255)
                                                                  gTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGATGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAgaga                                                                      >  2:569849/1‑143 (MQ=255)
                                                                        ctgAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGGAGAGGc                                                                >  1:484960/1‑143 (MQ=255)
                                                                        ctgAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGc                                                                >  2:702168/1‑143 (MQ=255)
                                                                          gAACAAATTACTGACACCGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTa                                                              <  1:368975/143‑1 (MQ=255)
                                                                           aaCAAATTACTGACAACGCAAGTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAg                                                             <  2:41275/143‑1 (MQ=255)
                                                                             cAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTCGAGAAGAGGCTAGTg                                                           >  1:639989/1‑143 (MQ=255)
                                                                                aTTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACg                                                        >  1:739380/1‑143 (MQ=255)
                                                                                 ttACTGACGACGCAATTATTGCATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGc                                                       <  1:342746/143‑1 (MQ=255)
                                                                                      gACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTCGTGACGCAAGGc                                                  >  1:237271/1‑143 (MQ=255)
                                                                                       aCAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcg                                                 >  1:565985/1‑143 (MQ=255)
                                                                                       aCAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcg                                                 >  1:483292/1‑143 (MQ=255)
                                                                                         aaCGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCGTCAACCGTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtc                                               <  2:181454/143‑1 (MQ=255)
                                                                                           cGCAATTATTGAATGAGCCAGAATGAGCTAAGGTTGAAGGGGCTGGCACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGCTTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGcgtcgt                                             <  1:23998/143‑1 (MQ=255)
                                                                                           cGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGGCCTTGCAGCCTTAGCAGTAGCGTGGGATGATTTCACAGTTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCAAGTGACGCAAGGcggagt                                             >  1:827322/1‑139 (MQ=255)
                                                                                              aaTGATTGAATGAGCCAGAATAAGCTAAGGTGGAAGGGGCTGGGACGCCCATTCAACGTGAGCAGTAGAGTGGGATGATTTCACAATTAGAAAGACCTGCAAGGTGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCa                                          <  2:15121/143‑1 (MQ=255)
                                                                                                 tattGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGa                                       <  1:804594/143‑1 (MQ=255)
                                                                                                      aaTGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACgg                                  >  1:513694/1‑143 (MQ=255)
                                                                                                        tGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGAt                                <  1:182896/143‑1 (MQ=255)
                                                                                                                             tGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCaa           <  2:549527/143‑1 (MQ=255)
                                                                                                                               acgtgtcTGGACCGCCCCTTCAACCTTAGCAGCAGCGTGGGCTGATTTCACAATTAGAATGGCCTGCGTCATGAGCTAGAGAAGAGGCTAGTGACGCAATGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAAcc         <  1:516930/137‑1 (MQ=255)
                                                                                                                                    gCTGGAGCGTCCCTTGAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACt    <  2:335491/143‑1 (MQ=255)
                                                                                                                                    gCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACt    >  1:638159/1‑143 (MQ=255)
                                                                                                                                       tGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGc  >  1:452231/1‑143 (MQ=255)
                                                                                                                                       tGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGc  >  1:471223/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                         
AATAAAATCCCCCCCAAAAAAATTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGTACTGCTGAACAAATTACTGACAACGCAATTATTGAATGAGCCAGAATAAGCTAAGGTTGAAGGGGCTGGAACGCCCCTTCAACCTTAGCAGTAGCGTGGGATGATTTCACAATTAGAAAGACCTGCATGATGAGCTAGAGAAGAGGCTAGTGACGCAAGGCGTCGTGCAGGACACGGATCACCGAGATGGGCATCGCCAACCAGACTGC  >  NC_000913/59163‑59439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.