| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2102943 | NA (NA) | 26 (0.630) | 23/282 | 0.9 | 45.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2103584 = | 31 (0.750) | coding (926/1119 nt) | wbbK | lipopolysaccharide biosynthesis protein | |||||
AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2102802‑2102943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAT > NC_000913/2103584‑2103711 AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGGAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCC > 1:586391/1‑143AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCC > 2:300480/1‑143 GAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTA > 1:602866/1‑143 ttcgTGGTCTGACGGCGCCTCCTGCGGAAGTGACTGTCGGCGAAGGCAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGA < 1:221779/139‑1 GACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGC < 1:273862/143‑1 TTACTGCTGAATTCACTGTCGGTGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTACATGGGAAATCTGATGCTAATACCC > 2:469177/1‑143 GCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGCGACTTGTTCGCACCTTCCCTAGTCAATTGGAACTCTGATCCTTATACCCCCTTc > 2:241082/1‑142 CTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCCTAGTCAATGGGAAGTCTGATGAGAATACCCAATTAC > 2:189504/1‑143 GAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGCGAAATCTGGTGCTAATACCCACTTACCT > 2:26866/1‑143 TGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCATGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTT > 1:492595/1‑143 cgcAGGTAAGTTGATCACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTC < 2:22964/140‑1 GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCA < 1:249861/143‑1 GAACGTAAGTTGATGACTCATGATGAACCCTGTCCTATGGCTCCAGATCACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCA < 1:403756/143‑1 GTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTGGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCGGACA > 1:14585/1‑143 TTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTACCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCACATTAGCTTCCAACAAGGGC > 2:238106/1‑143 ATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCACTCTTTAGCTTCAGACAACGGCAAT > 1:329811/1‑143 cccGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACC < 1:307751/140‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTCACC > 2:579475/1‑143 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTA < 2:492595/143‑1 TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGA < 1:300480/143‑1 gGGCTCCACATGACAAACATGATCTCATATCACGGACTTGTTCGCACCTTCCCTAGTAAATCGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAA < 2:379907/142‑1 gTCCAGCTCACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTCATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAAC < 2:35535/142‑1 TCAGATCAGGGACTTGTTCGCACCTTCCCTAGGAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTAT < 1:495172/143‑1 GGACTTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGAT > 1:302551/1‑143 TTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGACAACAAACTATATCTGAAATATTATAACAATGATCGAT > 2:577382/1‑143 TTGTTCGCACCTTCCCTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAT > 2:481572/1‑143 AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2102802‑2102943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAGTAAATGGGAAATCTGATGCTAATACCCACTTACCTCGCTCTTTAGCTTCAGACAACGGCAATCCCCATGTTTCTAACCTAGAGGGAAAACAAACTATATCTGAAATATTATAACAATGATCGAT > NC_000913/2103584‑2103711 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |