New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994982 (0.050)45 (1.110) 36/274 0.1 97.9% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

AAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT  >  NC_000913/1299356‑1299639
                                                                                                                                              |                                                                                                                                             
aaaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAA                                                                                                                                               >  2:420370‑M1/1‑143 (MQ=255)
       agttagttATAATGATTTCCTTAACTTCTTCTCCTCACCATCATGTTATTGTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataa                                                                                                                                        <  2:299667‑M1/143‑8 (MQ=255)
       agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATCATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTCCTAActaataa                                                                                                                                        >  1:674109‑M1/1‑136 (MQ=255)
            gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTACTTCCACTGCCTTTGATAGAGGAAAGTGCTAAataataatcaat                                                                                                                                   >  2:442505‑M1/1‑131 (MQ=255)
            gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaac                                                                                                                                   >  2:607579‑M1/1‑131 (MQ=255)
                     aTTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                                                                                                                          <  2:675391‑M1/143‑22 (MQ=255)
                      tttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                                                                                                         >  1:50256‑M1/1‑121 (MQ=255)
                        tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACGTAATTGTGCTTTGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                       <  1:318769‑M1/143‑25 (MQ=255)
                               cTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatt                                                                                                                >  2:680950‑M1/1‑112 (MQ=255)
                                tGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattt                                                                                                               <  1:730638‑M1/143‑33 (MQ=255)
                                  cTTCTCCTCACCCTCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                             <  1:17320‑M1/143‑35 (MQ=255)
                                   ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGGGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                                                                                                            >  1:287144‑M1/1‑108 (MQ=255)
                                       ccgcaccATCATGTTATTTTCGCCACATGATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactact                                                                                                        <  2:271084‑M1/140‑40 (MQ=255)
                                            ccATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAAGTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactacgggaac                                                                                                   <  2:632564‑M1/143‑45 (MQ=255)
                                                  tGTTAGTGTCGCCACTTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                             <  2:731639‑M1/143‑51 (MQ=255)
                                                       ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaataagta                                                                                        >  1:97314‑M1/1‑88 (MQ=255)
                                                         ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATCATATTATTAATTCCACTGCCTTTGGTAGAGGAAACTGCTAAataataatcaattgttcaatgattgtgaatttcactactgaaacgttaatccgaaca                                                                                      >  2:525432‑M1/1‑86 (MQ=255)
                                                             ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCATTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactataatcaaaaaagata                                                                                  >  2:511126‑M1/1‑82 (MQ=255)
                                                               acaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagataga                                                                                >  1:189382‑M1/1‑80 (MQ=255)
                                                                catcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCGACTGCCTTTGGTAGAGGAAAGTGCTGAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagac                                                                               <  2:391078‑M1/143‑65 (MQ=255)
                                                                 atcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagaca                                                                              >  1:287375‑M1/1‑78 (MQ=255)
                                                                   catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaacttattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                            >  2:660553‑M1/1‑76 (MQ=255)
                                                                   catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                            >  2:660557‑M1/1‑76 (MQ=255)
                                                                    atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTACTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgc                                                                           >  2:192797‑M1/1‑75 (MQ=255)
                                                                    atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTGAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaacgatagacatgc                                                                           >  2:310492‑M1/1‑75 (MQ=255)
                                                                    atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaaccgtcatcagaaaagatagacatgc                                                                           <  2:419875‑M1/143‑69 (MQ=255)
                                                                       aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                        <  2:290299‑M1/143‑72 (MQ=255)
                                                                                       tgaatAATTGGAATGATATTATGAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                        <  2:3669‑M1/142‑88 (MQ=255)
                                                                                          ataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattg                                                     >  1:644971‑M1/1‑53 (MQ=255)
                                                                                              ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactcctggaactgtaatcagaaaagatagacatgcttagccaatcgctatttgattgaatt                                                 >  1:244332‑M1/1‑49 (MQ=255)
                                                                                              ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                 >  2:212545‑M1/1‑49 (MQ=255)
                                                                                              ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatt                                                 >  1:581915‑M1/1‑49 (MQ=255)
                                                                                              ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatctgattgaatt                                                 >  2:214024‑M1/1‑49 (MQ=255)
                                                                                                  aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                             >  2:290661‑M1/1‑45 (MQ=255)
                                                                                                  aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                             >  2:684161‑M1/1‑45 (MQ=255)
                                                                                                        attattAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcaatactggaactgtaatcagaaaagataaccatgcttagccaatctctacttgattgaattgaaagatatt                                       >  2:644466‑M1/1‑39 (MQ=255)
                                                                                                                 tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggc                              >  1:452770‑M1/1‑30 (MQ=255)
                                                                                                                   cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                            >  2:197970‑M1/1‑28 (MQ=255)
                                                                                                                       gCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                        >  2:587700‑M1/1‑24 (MQ=255)
                                                                                                                        ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatg                       >  1:152375‑M1/1‑23 (MQ=255)
                                                                                                                        ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcagggatg                       >  1:463757‑M1/1‑23 (MQ=255)
                                                                                                                           ttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                    <  1:151611‑M1/143‑124 (MQ=255)
                                                                                                                                   aacgttcgCTAAGGTAGGTGCGAACAAGTCCCTGATATGAGATCATGTTCGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCTCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGaaaa            <  2:558677/136‑1 (MQ=11)
                                                                                                                                     atgttGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTCCCTTCGCCGACAGTGACTTCAGCAGTAAGCGCCGTCAGACCAGAACagc          >  2:719028/5‑142 (MQ=255)
                                                                                                                                        gTGCTGAataataatcaattgttaaatgatggggcatttcactactggaactggaatcagacaacatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctg       <  1:660553‑M1/143‑137 (MQ=255)
                                                                                                                                        gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctg       <  1:660557‑M1/143‑137 (MQ=255)
                                                                                                                                         tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcacgctatagattctga      >  1:292948‑M1/1‑6 (MQ=255)
                                                                                                                                          gCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaataactaattggtttaattgaaagatgtttgttaaggcatggatgcaagctatagattctgat     >  1:636735‑M1/1‑5 (MQ=255)
                                                                                                                                           cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata    >  2:96054‑M1/1‑4 (MQ=255)
                                                                                                                                            tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac   >  1:197962‑M1/1‑3 (MQ=255)
                                                                                                                                             aaataataatcaattgttaaattattgtgcatttcactaccaaaactgtaatcagaaaagatagacatgcttagccaaaccctaaccaatcgaattaaaagaagtttgttaaggcatgtatgcaagctatagattctaatacg  >  2:707356‑M1/1‑2 (MQ=255)
                                                                                                                                              |                                                                                                                                             
AAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT  >  NC_000913/1299356‑1299639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.