New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1279401 =	36 (0.870)	4 (0.100)	4/272	5.6	10.4%	intergenic (+53/‑463)	narK/narG	nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
	?	NC_000913	1279431 =	34 (0.850)					intergenic (+83/‑433)	narK/narG	nitrate/nitrite transporter/nitrate reductase 1, alpha subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT  >  NC_000913/1279297‑1279572                                                                                                                                       |                                                                                                                                               cGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGGTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTCGTAAGCTCCTGGGAttcattca                                                                                                                                        >  2:705825/1‑143 (MQ=255)               ttACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTCCTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCCCTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCt                                                                                                                          <  1:393264/143‑1 (MQ=255)                 aCCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGACTCATTCACTTGCCGCCTTCCTG‑t                                                                                                                       >  1:596038/1‑143 (MQ=255)                      ggCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAAcc                                                                                                                  >  2:453136/1‑143 (MQ=255)                         ggTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TCATCCGat                                                                                                               >  1:8736/1‑142 (MQ=255)                                 gTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAGACCGAATtataaac                                                                                                       >  2:217781/1‑140 (MQ=255)                                              aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTg                                                                                          <  1:451971/143‑1 (MQ=255)                                              aaaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACGTACGTTAGTAAGCTCCTGGGAGTCATCCCATTG‑GGGTACCCTGTTAAACCGAATTATATAGAGTAAAATATTTg                                                                                          >  2:737740/1‑143 (MQ=255)                                               aaaTTAACCGTTACTCGTCATACTTCGGATTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGATCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TACATCGAATTATATAGAGTAAAATACTTGa                                                                                         >  2:436689/1‑143 (MQ=25)                                               aaaTAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGa                                                                                         >  1:79589/1‑143 (MQ=255)                                                   aaaCCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTCTAGTAGGCTCCTGGGATTCATTCACCTGCCGCGTCCCTG‑TAAACCGACTCATCTAGAGTCAAATACTGGATCAt                                                                                     >  2:495174/1‑143 (MQ=255)                                                               gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc                                                                         >  1:495647/1‑143 (MQ=255)                                                               gTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGc                                                                         >  1:748555/1‑143 (MQ=255)                                                                     cTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCatgatg                                                                   >  1:362648/1‑143 (MQ=255)                                                                        cGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcg                                                                >  1:630006/1‑143 (MQ=255)                                                                          ggTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTcgcg                                                              >  1:460670/1‑143 (MQ=255)                                                                                aTGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATTTGCGTCTATCCTTTGCGCGGCATGATGTCGCGCttttt                                                        >  1:316309/1‑143 (MQ=38)                                                                                 tgtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCtttttt                                                       >  1:538182/1‑143 (MQ=255)                                                                                  gtgCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCttttttt                                                      <  1:638102/143‑1 (MQ=255)                                                                                    ggtgcggctgcgTTCATCCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt                                                    <  2:43126/141‑1 (MQ=255)                                                                                    gctgcggctgcgTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTAt                                                    >  1:54644/1‑143 (MQ=255)                                                                                              cgTTCATTCACCCTAGTCACTGACTTTAGTAAGCTCCTGTGATTCATTCACTTGCCGGCTCCGGG‑GGGACAACACGATATAGGGTAAAACATTTTATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTa                                          <  1:352337/143‑1 (MQ=255)                                                                                                ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCTTTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAGTATTTGCTTATCCTTTGCGCGCCATGATGTCGCGCTTTTTTTATGCGTCCTTTGGt                                        >  1:617111/1‑143 (MQ=255)                                                                                                ttcattcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGt                                        <  1:705825/143‑1 (MQ=255)                                                                                                   attcaCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTac                                     <  2:364139/143‑1 (MQ=255)                                                                                                    ttcaCCCCGGTCACTTACTTTAGTAGGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGTTATGGTTTCCCGCTATTTTTATGCGTCATTTAGTTaca                                    <  2:419684/143‑1 (MQ=255)                                                                                                       cccccAGTCAATTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGCCGCGCTTTTTTTATGCGTCATTTAGTTacagca                                 >  2:132800/2‑143 (MQ=255)                                                                                                       aCCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTacaaca                                 >  1:624915/1‑143 (MQ=255)                                                                                                          ccAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAACTATTTGATTTGGTTTTATGCGGCACGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATAc                              >  1:755697/1‑143 (MQ=255)                                                                                                            aGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTa                            >  2:420746/1‑143 (MQ=255)                                                                                                                    acttGAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATCAACGTTTGTAGATTATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGCCATTTAGTTACAACATACTAATGTtata                    <  1:173789/143‑1 (MQ=255)                                                                                                                      tttAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATACATTGTTCAGGATAATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACGAATGTTATATg                  >  1:174056/1‑143 (MQ=255)                                                                                                                       ttAGTAAGCTGCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATgg                 <  2:685342/143‑1 (MQ=255)                                                                                                                           tAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTa             <  2:415034/143‑1 (MQ=255)                                                                                                                                  cTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGcc      <  1:91362/143‑1 (MQ=255)                                                                                                                                   tGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTTATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCg     >  2:616688/1‑143 (MQ=255)                                                                                                                                     ggATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGa   <  2:538182/143‑1 (MQ=255)                                                                                                                                      gATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAt  >  2:353284/1‑143 (MQ=255)                                                                                                                                      gATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTCACAACATACTAATGTTATATGGTTTATTTCGCCGGAt  >  2:315594/1‑143 (MQ=255)                                                                                                                                       |                                                                                                                                               CGCCTGCGTAGTGATTACCTGGGCGGTATATGGTCGGCATTCTAAAAAATAAACCGTTACTCGTCATACTTCGGGTTACATGTGCTGCGGCTGCGTTCATTCACCCCAGTCACTTACTTTAGTAAGCTCCTGGGATTCATTCACTTGCCGCCTTCCTG‑TAAACCGAATTATATAGAGTAAAATATTTGATTATCCTTTGCGCGGCATGATGTCGCGCTTTTTTTATGCGTCATTTAGTTACAACATACTAATGTTATATGGTTTATTTCGCCGGAT  >  NC_000913/1279297‑1279572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.