New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1954429 =NA (NA)4 (0.100) 4/268 5.6 NA noncoding (1/98 nt) RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 2549533 NA (NA)noncoding (68/98 nt) RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

TTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCA  >  NC_000913/2549392‑2549668
                                                                                                                                             |                                                                                                                                       
ttAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAGTTCGTAgg                                                                                                                                        >  2:439701/1‑143 (MQ=255)
 tAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAATTCGTAgga                                                                                                                                       >  1:311576/1‑142 (MQ=255)
  aaaGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGcc                                                                                                                                      <  1:743552/143‑1 (MQ=255)
     gCAGAATTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCCGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGa                                                                                                                                   <  1:256355/143‑1 (MQ=255)
         aaGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACACTATATTGAATTAGCACGATTTCGTCTGCCGGATAAg                                                                                                                               >  1:703539/1‑143 (MQ=255)
               taaAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGGTc                                                                                                                         >  1:45071/1‑143 (MQ=255)
                           tcagtAATGTTACTGGCTAGTATGGAAGGACTGACAAACGCAAAACTTCCTGACGCGCTACGCTTATCAGTCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                                                                                                             <  2:221289/143‑1 (MQ=18)
                                 aTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCgtgt                                                                                                       >  1:432459/1‑143 (MQ=255)
                                     tACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCCTCCGGCGTGGACag                                                                                                   >  2:723095/1‑142 (MQ=255)
                                       ctggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAcg                                                                                                 <  1:439701/143‑1 (MQ=255)
                                                ttgatactgctgcCAAACGCAAAACTGCCTTATGCGTTACGCTTTTCAGGCCTACATGGAGCCCACAATATATTGAATTAGCACGACTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTgg                                                                                        <  1:36218/136‑1 (MQ=18)
                                                   agagTGTTGACAAACGAAAAACTGCCTTGTGCGCTACGGTTATGAGGCATACGTGGAGCCCACAATATACTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTca                                                                                     <  1:232198/143‑1 (MQ=21)
                                                          tGACAAACCCCAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTAGAGCCCACACTATATTGAATTAGCACGATTTCGTAGGCCGGATACGGCGTTCACGCCGCATCCGGAGCGTACAACGCGCCTTTGCTcaacacacg                                                                              >  2:342023/1‑139 (MQ=18)
                                                            aCAAACTCATAACTTCCTTCTGCTCTACGTTTTTCAGCTTTATGTGGAGCCCACAATATATTGAATTAGCGCGATTCCGTAGGCCGGAGAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa                                                                            <  1:230584/143‑1 (MQ=21)
                                                            aCAAACGCAAAACTGCCTGATGCGCTACGTTTATCAGGCCTACGTAGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGTGGGATAAGGCGTTCACGCCGCGTGCGGCGTGTTCCACGCTCACTTTTTCAACAATCTGa                                                                            <  1:760522/143‑1 (MQ=18)
                                                             cgaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGGCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAg                                                                           <  2:305385/141‑1 (MQ=255)
                                                              aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                                                                          >  2:289752/1‑143 (MQ=255)
                                                              aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                                                                          >  1:275565/1‑143 (MQ=255)
                                                              aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCACAATATATTGAATTAGCACGATTTCGTAGGCCGCATAAGGCGTTCACGCCCCCTCCGGCGTGTACAACGCGCACCAGGTCAATCATCTgctgc                                                                         >  1:289272/1‑139 (MQ=18)
                                                              aaaCGCAAAACTGCCTGATGCGCTACGCTTAGCAGACCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACCATCTGAgg                                                                          >  2:419390/1‑143 (MQ=255)
                                                                aCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGcc                                                                        >  1:454774/1‑143 (MQ=255)
                                                                 cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCca                                                                       >  1:218031/1‑143 (MQ=255)
                                                                            cTGATGCGCTACGCTTATCAGGCCTACATGAAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTGTACAACGCGCACCTGGTCAACAATCTGAGGCAAGTCAGTAATGt                                                            >  2:92767/1‑143 (MQ=21)
                                                                             tGATCCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGACTTCGTAGGCCGGATAAGGCGTTCACACCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAAACTGAGGCCAGTCAGTAATgat                                                           >  2:309241/1‑141 (MQ=255)
                                                                                   gcTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACTCCCACCCGCCCAACAATCTGAGGCCAGTCAGAAACGCTAcaccc                                                     >  2:302019/1‑139 (MQ=21)
                                                                                      aCGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTgg                                                  <  1:742807/143‑1 (MQ=255)
                                                                                       cGCTTATCAGGCCGACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGc                                                 <  1:610397/143‑1 (MQ=255)
                                                                                          ttATCAGGCCTACGTGGAGCCCACAAGATATTGAATTAGCACGATTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGCCCACCATCTGCGGCCAGTCAGTCATGTTACTCCCTCGccct                                              >  2:726842/1‑141 (MQ=25)
                                                                                               aGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGGCAGTAATGTTACTGCCTGGCCTTTAATc                                         >  1:323454/1‑143 (MQ=255)
                                                                                                ggtttACGTTGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa                                        <  1:119775/139‑1 (MQ=255)
                                                                                                ggCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAGTTTCCGGCCCGACAGTAATGTTACGGCCTGGCCTTTAATcg                                        >  2:406626/1‑142 (MQ=25)
                                                                                                ggCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGACGAATCGGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCa                                        >  1:284743/1‑143 (MQ=255)
                                                                                                  ccTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt                                      <  1:708449/143‑1 (MQ=255)
                                                                                                  ccTACGAGGAGCCCACATTATGTTCAATTAGCACGATTGCGTAGGCCGGATAAGGCGTTCACGCTGGATCAGACTTTTACGACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAAt                                      <  2:664067/143‑1 (MQ=37)
                                                                                                      cGTGGAGCCCACAATATATTGAATTAGGACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGGATCCGGCGTGTACAACGCGCACTTGGTCAACAATCCGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAAt                                  <  1:383919/143‑1 (MQ=255)
                                                                                                      cGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACACCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTCATCAATGact                                  >  1:288857/1‑141 (MQ=255)
                                                                                                           aGCCAACAATTGACTGAGTTAGCAGTATTGCGTAGGCCGGATAAGGCGTTCATGTCGCAGCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaa                             <  2:609878/143‑1 (MQ=37)
                                                                                                            gCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGaaa                            <  2:64933/143‑1 (MQ=255)
                                                                                                                     gtcttGAATTCGCCCGCTGTCGTATGCCGGATAAGGCGTTCGTGCCGCATCCGGCGTGTGCATCGCGCACTTGGTCAACAATCTGACGCCAGTCAGTAATGTTACTTCCTGGCCTTTAATCAATGAATCAGAATTGCTTACAg                   <  2:194912/140‑1 (MQ=255)
                                                                                                                      tatTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc                  <  2:390590/143‑1 (MQ=255)
                                                                                                                      tatTGAATTAGCACCATTGCGTAGGCCGGATAATGGGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgc                  <  2:427568/143‑1 (MQ=255)
                                                                                                                        ttGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgcgc                <  2:597118/143‑1 (MQ=255)
                                                                                                                        ttGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAgcgc                >  1:410950/1‑143 (MQ=255)
                                                                                                                              gaGCACGAGTTCGTAGGCGGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCaa          <  2:644781/142‑1 (MQ=255)
                                                                                                                                 cACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTAATGGCTGGCCTTTAATCAATGAACCAGAAACGCTTACAGCGCCATCAACtt       >  2:6849/1‑143 (MQ=255)
                                                                                                                                  aCGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCACTGAATCAGAAACGCTTCCAGCGCCATCAACTTg      >  1:620715/1‑143 (MQ=255)
                                                                                                                                    gATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGGCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTc    <  1:693079/143‑1 (MQ=255)
                                                                                                                                      tttCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCACACTTGGTCAACAATCTGAGGCCCGCAAGTAATGTTACTGCCTGGCCTTTGATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCa  >  1:317817/1‑143 (MQ=38)
                                                                                                                                             |                                                                                                                                       
TTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAATCAATGAATCAGAAACGCTTACAGCGCCATCAACTTGTCCA  >  NC_000913/2549392‑2549668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.