Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 51 [0] [0] 52 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)49 (1.250) 42/266 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

TTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978366‑1978642
                                                                                                                                        |                                                                                                                                            
tttACACTTATCTAAGTTTTGTCCTGAATCGACGCATCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGCTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                        <  2:575591‑M1/143‑7 (MQ=255)
tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                        >  1:685575‑M1/1‑137 (MQ=255)
   acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACCTAAATGtataagtca                                                                                                                                     >  2:185166‑M1/1‑134 (MQ=255)
          tCTAAGAGTTTTCCTAAATCGCCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                              <  1:743709‑M1/143‑17 (MQ=255)
          tCTAACATTTCTCCGCAAGCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCTATTTTCAATAATGCTTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                              <  2:378945‑M1/143‑17 (MQ=255)
            tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAACAAGGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                            >  1:557563‑M1/1‑125 (MQ=255)
               gATTTTTCCTAAATCGACGCGACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                         <  2:227515‑M1/143‑22 (MQ=255)
                 ttgttcctAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  1:651965‑M1/140‑24 (MQ=255)
                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                                                                                                >  2:383344‑M1/1‑113 (MQ=255)
                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttaatttgggtgtatt                                                                                                                >  2:522155‑M1/1‑113 (MQ=255)
                        tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAACAAGGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt                                                                                                                >  2:704518‑M1/1‑113 (MQ=255)
                           aTCGACGCAACTGTACTCGTGACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttca                                                                                                             <  1:286724‑M1/143‑34 (MQ=255)
                              gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtcttgggtgtctttcactc                                                                                                          >  1:607439‑M1/1‑107 (MQ=255)
                               aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                         >  1:253524‑M1/1‑106 (MQ=255)
                                cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                                                                        <  1:542573‑M1/143‑39 (MQ=255)
                                   aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggctgtatttcaatctgtta                                                                                                     >  2:221919‑M1/1‑102 (MQ=255)
                                      tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                  >  2:603719‑M1/1‑99 (MQ=255)
                                       gTACTCGTCACTACACGCTCGTACAACGGGGGGGGGCTGCGATTTTCAATAATTCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                 <  2:281706‑M1/143‑46 (MQ=255)
                                       gTACTCGTCACTACACGCACCTACACCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                 <  1:93585‑M1/143‑46 (MQ=255)
                                       gTACTCGTCACTACACGCACATACAACGGGGGGGGGCTGCGGTTTTCAATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                 <  2:740328‑M1/143‑46 (MQ=255)
                                       gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAAGCCCGGTGCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                 >  1:174034‑M1/1‑98 (MQ=255)
                                           tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtctaagtcatacttttgttttgggtgtatttcaaactgttcaaaagtcg                                                                                             >  2:83344‑M1/1‑94 (MQ=255)
                                           tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactcttgttttggttctatttcaatctgtgtaaaagttt                                                                                             >  2:150171‑M1/1‑94 (MQ=255)
                                             gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTGGATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                           >  1:321698‑M1/1‑92 (MQ=255)
                                             gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggcatatttcaatctctaaaaaagttttt                                                                                           >  2:602866‑M1/1‑92 (MQ=255)
                                              acaCTACACACACAAACAACGGAGGGGGGCCGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                          <  1:499601‑M1/142‑53 (MQ=255)
                                               cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                         <  1:54357‑M1/143‑54 (MQ=255)
                                                  tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaagaagtgtttcgcta                                                                                      >  1:470134‑M1/1‑87 (MQ=255)
                                                   acacGCACATACGACGGAGGGGGGCGGCGATTCTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTATCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                     <  1:308054‑M1/143‑58 (MQ=255)
                                                    cacacacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttgtgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                    >  2:250630‑M1/1‑85 (MQ=255)
                                                      cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgct                                                                                  <  1:651108‑M1/143‑61 (MQ=255)
                                                         acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtcttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                               >  1:633703‑M1/1‑80 (MQ=255)
                                                              cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                          >  2:626669‑M1/1‑75 (MQ=255)
                                                                aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATACATGtataagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                                                                        >  2:618199‑M1/1‑73 (MQ=255)
                                                                  ggAGGGGTGCTGCGAATTTCAAGAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                      <  2:3396‑M1/143‑73 (MQ=255)
                                                                   gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                     >  1:574470‑M1/1‑70 (MQ=255)
                                                                   gAGGGGGGCTGCGAGTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATATATGtataagtcatacttttgtgttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                     <  2:367650‑M1/143‑74 (MQ=255)
                                                                         ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaatcaaaaataaaaca                                                               >  2:192817‑M1/1‑64 (MQ=255)
                                                                          gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                              >  2:227419‑M1/1‑63 (MQ=255)
                                                                          gCTGCGATTTTCAATAACGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                              <  1:183906‑M1/143‑81 (MQ=255)
                                                                                         aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                               <  1:536019‑M1/143‑96 (MQ=255)
                                                                                                       aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgagaccggaataatcgaaatgggatgttgcgcaccg                                 >  1:538404‑M1/1‑34 (MQ=255)
                                                                                                            acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  2:552422‑M1/1‑29 (MQ=255)
                                                                                                              aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                          >  2:721383‑M1/1‑27 (MQ=255)
                                                                                                               aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaata                         >  1:404741‑M1/1‑26 (MQ=255)
                                                                                                                aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                        <  1:543831‑M1/143‑119 (MQ=255)
                                                                                                                     tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   >  1:511502‑M1/1‑20 (MQ=255)
                                                                                                                          tACTTAACATAAATGtataagtcatacttttattttgggtgtatttcaatatgataaaaattttttcgctaagctagcaagcaaaaatgaaacaggaataatcgaactgagatcttacgcacagtaaaaaaaactcagcctaa              >  2:343606‑M1/1‑15 (MQ=255)
                                                                                                                           aCTTAACATAATTGtataagtcatccttttgtgttgggtgtatttcaatctgttaaaaaggttctcgcgacgctcgcaagcaaaaatgaaacaggaataatcgcaatgggatgttgcgcacagtcaaaataactcaccgtaaa             <  2:194093‑M1/143‑130 (MQ=255)
                                                                                                                                  aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat      >  2:69062‑M1/1‑7 (MQ=255)
                                                                                                                                      aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaccgtcaaaataactcaccgtaaataatcatctgc  <  2:398584‑M1/143‑141 (MQ=255)
                                                                                                                                        |                                                                                                                                            
TTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978366‑1978642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: