Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 60 [0] [0] 60 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)55 (1.450) 45/266 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978365‑1978643
                                                                                                                                         |                                                                                                                                             
gtttaCACTTATCTAAGACTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCAGATACAACGGAGGGAGGCTACGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCAATTACTTAACATAAATGtataa                                                                                                                                          <  2:325024‑M1/142‑6 (MQ=255)
cTTTACACTTATCTAAGATTTTTCCTACATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                          <  1:190914‑M1/143‑6 (MQ=255)
 tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                         >  1:496832‑M1/1‑137 (MQ=255)
  ttACACTTATCTAAGATTTGTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                        <  2:472510‑M1/143‑8 (MQ=255)
      acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatagggcata                                                                                                                                    >  1:144367‑M1/1‑132 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                             >  1:92452‑M1/1‑125 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAACTCAATTAATTAACATAAATGtataagtaatacttctca                                                                                                                             >  2:313953‑M1/1‑125 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGGGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                             >  2:123069‑M1/1‑125 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATCTTCAATAATGCGTGATGCAGACCACACAAAACACTCAATTACCTAACATAAATGtataagccatacttttgc                                                                                                                             >  2:575905‑M1/1‑125 (MQ=255)
             tAAGATTTTTCCGAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                             <  1:464586‑M1/143‑19 (MQ=255)
                 aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                         <  1:525871‑M1/143‑23 (MQ=255)
                 aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                         <  1:101657‑M1/143‑23 (MQ=255)
                  tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  1:177518‑M1/143‑24 (MQ=255)
                  tttttCCCAAATCGACGCGACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  2:189862‑M1/143‑24 (MQ=255)
                        cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAGCAGGAAGGtgtaagtcatacttttgttttgggtgtat                                                                                                                  >  1:133351‑M1/1‑114 (MQ=255)
                        cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat                                                                                                                  >  1:136891‑M1/1‑114 (MQ=255)
                          agatcGACGCGACTGGACTTGTCAGTACACTCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                <  2:115426‑M1/141‑32 (MQ=255)
                          aaaTCGACGGAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                <  1:264008‑M1/143‑32 (MQ=255)
                                     aCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa                                                                                                     <  1:145222‑M1/143‑43 (MQ=255)
                                        gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATTAATTtataattcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:501484‑M1/143‑46 (MQ=255)
                                        gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:239247‑M1/143‑46 (MQ=255)
                                               tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                           <  1:383474‑M1/143‑53 (MQ=255)
                                               tCACTACACCCACATACAACGGAGGGGGGCTGCGATTTTCAATACTGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                           <  1:483117‑M1/143‑53 (MQ=255)
                                                    acacGCCCAGACAACGGAGGGGGGCTGCGATTTTCAAGAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttgtgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                      <  1:233842‑M1/143‑58 (MQ=255)
                                                           cacacaaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                               <  1:235804‑M1/140‑65 (MQ=255)
                                                            aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcga                                                                              >  1:497989‑M1/1‑78 (MQ=255)
                                                            aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                              <  1:730423‑M1/143‑66 (MQ=255)
                                                                aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttccctacgctagcaagcaa                                                                          >  1:323528‑M1/1‑74 (MQ=255)
                                                                 aCGGCGGGGGGCTGCGATCTTCAATAATGCGTGATGCATATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttggggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                                                                         <  2:387143‑M1/143‑71 (MQ=255)
                                                                   ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                       <  1:236462‑M1/143‑73 (MQ=255)
                                                                      ggggggCTGCGATTTTCAATCATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                    <  1:635219‑M1/143‑76 (MQ=255)
                                                                      ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                    >  2:137076‑M1/1‑68 (MQ=255)
                                                                           gCTGCGATTTTCAAGAATGCGTGATGCAGATCACACAAAACTCTCAATGACTGAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                               <  2:674746‑M1/143‑81 (MQ=255)
                                                                             tGCGATTTTCAATAATTCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             <  1:364581‑M1/143‑83 (MQ=255)
                                                                             tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtgatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagcagaacttaaacaggt                                                             >  2:676865‑M1/1‑61 (MQ=255)
                                                                                  ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                        <  1:484124‑M1/143‑88 (MQ=255)
                                                                                  ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                        >  2:7836‑M1/1‑56 (MQ=255)
                                                                                     tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                     <  2:86628‑M1/143‑91 (MQ=255)
                                                                                           atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACAGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                               <  2:263063‑M1/143‑97 (MQ=255)
                                                                                            tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                              <  1:617594‑M1/143‑98 (MQ=255)
                                                                                              cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                            >  1:314163‑M1/1‑44 (MQ=255)
                                                                                                  aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                        >  1:668992‑M1/1‑40 (MQ=255)
                                                                                                   tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcg                                       <  2:720276‑M1/143‑105 (MQ=255)
                                                                                                   tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaacgggatgtagcg                                       >  2:199881‑M1/1‑39 (MQ=255)
                                                                                                      aGATCACACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcac                                    <  1:496995‑M1/143‑108 (MQ=255)
                                                                                                       gATCACACAAAACCCGCAATTACTTAACATAAATGtataagtcatacttttgttctgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaatcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                   <  1:219691‑M1/143‑109 (MQ=255)
                                                                                                       gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                   >  1:400702‑M1/1‑35 (MQ=255)
                                                                                                              caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                            <  1:126423‑M1/143‑116 (MQ=255)
                                                                                                               tttactctcaattACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                           <  1:722335‑M1/137‑117 (MQ=255)
                                                                                                                       cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                   <  1:404916‑M1/143‑125 (MQ=255)
                                                                                                                        aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  >  1:40349‑M1/1‑18 (MQ=255)
                                                                                                                          ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgta                >  2:1480‑M1/1‑16 (MQ=255)
                                                                                                                           tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa               <  1:710345‑M1/143‑129 (MQ=255)
                                                                                                                                aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataat          >  2:207850‑M1/1‑10 (MQ=255)
                                                                                                                                 aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc         <  1:421460‑M1/143‑135 (MQ=255)
                                                                                                                                  cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca        >  1:247624‑M1/1‑8 (MQ=255)
                                                                                                                                   aTAAAGGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcggaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat       <  2:59116‑M1/143‑137 (MQ=255)
                                                                                                                                      aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg    <  2:558929‑M1/143‑140 (MQ=255)
                                                                                                                                       aTGtataattcatccttttgttctcggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgc   <  2:544373‑M1/143‑141 (MQ=255)
                                                                                                                                        tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  >  1:348395‑M1/1‑2 (MQ=255)
                                                                                                                                         |                                                                                                                                             
CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978365‑1978643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.