New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 303629	44 (1.090)	4 (0.110)	4/256	5.1	9.2%	intergenic (+24/+224)	yagU/ykgJ	DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
	?	NC_000913	= 303636	39 (1.070)					intergenic (+31/+217)	yagU/ykgJ	DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAA  >  NC_000913/303499‑303774                                                                                                                                          |                                                                                                                                           ttGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGcc                                                                                                                                       >  1:5543/1‑143 (MQ=255)    gACCTTTAGGTTGGTTCTGGTCCATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTTCTGAGCCAGACCCTGAGATCCCTTTAGGCTCACTCTGTGCATTCATTGATTGATAAAAATGGCGCAAATACAGCGCCAtt                                                                                                                                    <  2:717372/143‑1 (MQ=255)     aCATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGACTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCAttt                                                                                                                                   <  1:334543/143‑1 (MQ=255)        cctaccctggttctggtCTATTGAAATTATTCGCAGAGATTCACGAAACAGAATTACTCATGAGCCAGACCCTGACATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTta                                                                                                                                <  1:107491/137‑1 (MQ=255)          tAGTCTGGTTCTGTTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTtata                                                                                                                              <  2:83473/143‑1 (MQ=255)                       gtCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATGGGTTAAAAACAtt                                                                                                                 >  1:164086/1‑143 (MQ=255)                       gtCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACAtt                                                                                                                 >  1:543867/1‑143 (MQ=255)                          tATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCt                                                                                                              <  1:128860/143‑1 (MQ=255)                          tATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCt                                                                                                              <  1:500334/143‑1 (MQ=255)                          tATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCACTTTTATAGGTTAAAAACATTGCt                                                                                                              >  2:630751/1‑143 (MQ=255)                              gAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCttttt                                                                                                          >  1:708376/1‑143 (MQ=255)                               aaaTTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTta                                                                                                         >  1:351648/1‑143 (MQ=255)                                            agaTTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAg                                                                                            <  2:301762/143‑1 (MQ=255)                                                              tACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATc                                                                          <  1:496812/143‑1 (MQ=255)                                                                 tCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCCGATAGTCAGTGAGTATATcgcg                                                                       >  1:148253/1‑143 (MQ=255)                                                                 tCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCCGATGCAGGTATTCAGTGAGTCTATcgcg                                                                       >  1:197473/1‑143 (MQ=255)                                                                    tGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTa                                                                    <  1:509205/143‑1 (MQ=255)                                                                           tacgcTGAGATCCGTTGTGGCTCAAACAGATAATGCATTGAATGATCAAACCCGCGCAAATGCAGCGGCATTTTTATAGGTTAAAAACATTGCTTGTGATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAgg                                                             <  2:436963/139‑1 (MQ=255)                                                                                tGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCTCAAATACAAAGCCATTTGTAGAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGgatgat                                                        <  2:518225/143‑1 (MQ=255)                                                                                tGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGgatgat                                                        <  2:708376/143‑1 (MQ=255)                                                                                 gagaTCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGatgatg                                                       >  1:137583/1‑143 (MQ=255)                                                                                       ccTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGCAGATc                                                 >  2:368488/1‑143 (MQ=255)                                                                                        cTTTAGGCGCAAACCGATCATGCCTCGAATGATAAAATTGGCGCTAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATcc                                                <  2:277101/143‑1 (MQ=255)                                                                                              gCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTGTATTCTGATGCAGATAGTCAGTGAGTATATGGCGCTACTTCAGGGTGATGGAGAGCCggagaa                                          >  1:510716/1‑143 (MQ=255)                                                                                               cTCAAACAGATAATGCATTGCATGATACACACGGCGCAAATACAGCGCAATTCCAACAAACCTAAGACCTCAAGGTGTATGGTCTACTGCAGATACACAGTGAGTATATCGCGCTCCTTCATGAGTATGTAGATCAGAAGAAc                                         >  2:519502/1‑143 (MQ=255)                                                                                                tCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCCGTGAGTATATCGCGCTACTTCAGGATGATTGAGATACGCAGAACg                                        >  2:351482/1‑143 (MQ=255)                                                                                                 cAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATGCGGATGCAGATAGTGCGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGc                                       <  1:309778/143‑1 (MQ=255)                                                                                                 cAAACAGATAATGCATGGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGc                                       <  1:86012/143‑1 (MQ=255)                                                                                                   aaCAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACCTAGCTCTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTa                                     <  2:594791/143‑1 (MQ=255)                                                                                                          aaTGCATTGAATGCTAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACagaaga                              <  1:509237/143‑1 (MQ=255)                                                                                                              cATTGTAGGATTAGAATGGCGCGTATACATCGTCATGTTTATAGGTTAAATGCGTTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTGCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAgg                          <  2:178454/143‑1 (MQ=255)                                                                                                              cATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGAGGCAGATAGTCAGTGAGTATATCGCGCTAATTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAgg                          <  2:243804/143‑1 (MQ=255)                                                                                                                ttGAATGTTAAAAAGGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTTCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTGCAGGATGATGTAGATCCGCACACCGCTACAGAAGAGAGGCa                        <  2:523496/143‑1 (MQ=255)                                                                                                                   aaTGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCAtcg                     >  2:310433/1‑141 (MQ=255)                                                                                                                        tAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCt                <  1:520072/143‑1 (MQ=255)                                                                                                                         aaagaTGGCGCAAATACAGCGCCATTGTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTg               <  2:612241/143‑1 (MQ=255)                                                                                                                           aaaTAGCGCAAATACAGCGCCATTTTTCTAGGTTAAAAACAGTGCTTTTGATATTCTGATGCAGATAGACAGTGAGTATATCACGCTACTTCAGATAGATGTAGAGCTGAAGAAGCCTACAGAAGAGAGGCATTGATGCTgcc             >  2:590454/1‑141 (MQ=255)                                                                                                                              tGGCGCAAATTCAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCaaa          <  2:177827/143‑1 (MQ=255)                                                                                                                                gcgcAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGCACGCTACAGCAGAGCGGCCTTGTTGCCGGCcaaca        >  2:342705/1‑141 (MQ=255)                                                                                                                                gcgcAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATa        >  2:506529/1‑143 (MQ=255)                                                                                                                                   cAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATagaa     <  1:569207/143‑1 (MQ=255)                                                                                                                                      aTACAGCGCCATTTTTATGGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAgaagaa  <  2:164086/143‑1 (MQ=255)                                                                                                                                      aTACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAgaagaa  <  1:26191/143‑1 (MQ=255)                                                                                                                                          |                                                                                                                                           TTGGACATTTAGTCTGGTTCTGGTCTATTGAAATTATTCGCAGAGATTTACGAAACAGAATTACTCATGAGCCAGACCCTGAGATCCCTTTAGGCTCAAACAGATAATGCATTGAATGATAAAAATGGCGCAAATACAGCGCCATTTTTATAGGTTAAAAACATTGCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAA  >  NC_000913/303499‑303774

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.