Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 4,001,645 Δ5 bp coding (220‑224/951 nt) corA → magnesium/nickel/cobalt transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40016441 (0.020)58 (1.040) 52/280 0.1 98.3% coding (219/951 nt) corA magnesium/nickel/cobalt transporter
?NC_000913 4001650 = 1 (0.020)coding (225/951 nt) corA magnesium/nickel/cobalt transporter

CAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCC  >  NC_000913/4001502‑4001783
                                                                                                                                              |                                                                                                                                           
cAGTATGGATTGATCTTGTCGCACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGCAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCat                                                                                                                                             <  1:609003/143‑1 (MQ=255)
       gATTGACCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttc                                                                                                                                      <  1:814074‑M1/143‑8 (MQ=255)
          tGATCTTGTCGAACCGGACGACGACGAGCGAACGCCCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttc                                                                                                                                   <  1:273298‑M1/143‑11 (MQ=255)
             tCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGAGGGCCTGCATctccttcttcttc                                                                                                                                >  1:44821‑M1/1‑130 (MQ=255)
              cTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttct                                                                                                                               <  1:952533‑M1/143‑15 (MQ=255)
               ttGTCGACCCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACACCGAAGCATCGTCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctt                                                                                                                              <  1:582824‑M1/143‑16 (MQ=255)
               ttGTCGAACCGGACGACGACGAGCGACTGCCCGTCCCATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGCAACTGGAAGCCATCGAAGCATCGGCACGTTTCTTTGAAGACGCCGACGGCCCGCATctcccccttcttcct                                                                                                                              >  2:24902‑M1/1‑128 (MQ=255)
                   cgaaccgaacCACGACGCGCGACTGCCCGTACAATCTGAACTCGGCTAGAGCCTCACAACCCACCCGAAACGTGAAGACATCGACGCATCGGCACGTTTCTTTGAACACTCCGACGGCTTGCAT‑‑‑‑‑CTCCTTCTTCTTCTTTGaa                                                                                                                     <  2:550644/143‑1 (MQ=255)
                    gAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaag                                                                                                                         >  1:669646‑M1/1‑123 (MQ=255)
                        cGGACGGCGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgc                                                                                                                     <  1:567744‑M1/143‑25 (MQ=255)
                        cGGACGACGACGAGCGACTGCGCGTAGAATCTGAACTTGGCCAGTGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgc                                                                                                                     <  2:969128‑M1/143‑25 (MQ=255)
                            cgacgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaa                                                                                                                 <  1:313155‑M1/143‑29 (MQ=255)
                             gacgccgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaag                                                                                                                <  1:604006‑M1/143‑30 (MQ=255)
                              acgacgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaaga                                                                                                               <  1:668389‑M1/143‑31 (MQ=255)
                                gccgcgcgactGCGCGTACAATCTGAACTGGGCCCGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatc                                                                                                             <  2:54923‑M1/138‑33 (MQ=255)
                                  cgaGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcac                                                                                                           <  1:270781‑M1/143‑35 (MQ=255)
                                     gCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgcc                                                                                                        <  1:542191‑M1/143‑38 (MQ=255)
                                     gCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgcc                                                                                                        >  2:542191‑M1/1‑106 (MQ=255)
                                            cgcgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCCTCGGCACGTTTCTTTGAAGACGACGACGGCCTGCAGctcctccttaccccttgatgatgaggaagctcacgccggtaact                                                                                                 >  2:930857‑M1/1‑99 (MQ=255)
                                             gcgTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggacgatcacgccgctaactc                                                                                                >  1:428559‑M1/1‑98 (MQ=255)
                                                tACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagagcacgccggtaactccac                                                                                             >  1:610745‑M1/1‑95 (MQ=255)
                                                   aaTCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggacgagcacgccggtaactccaaagt                                                                                          >  2:437044‑M1/1‑92 (MQ=255)
                                                    agtcgaacgTGGCCGCTGCCTGGCAAGCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGGCGACGACGGCGTGCATcgccttctgcttctttgaagatgcggaagatcacgccggtaactccactgtg                                                                                         <  2:308451‑M1/139‑53 (MQ=255)
                                                     tCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtgg                                                                                        >  1:210599‑M1/1‑90 (MQ=255)
                                                       tGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca                                                                                      <  1:64363‑M1/143‑56 (MQ=255)
                                                       tGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggca                                                                                      >  1:479212‑M1/1‑88 (MQ=255)
                                                        gAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtcgcat                                                                                     >  1:110245‑M1/1‑87 (MQ=255)
                                                            ttGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgcagatgcggaaggtcacgccggtaactccaccgtcgcaatacg                                                                                 >  1:892732‑M1/1‑83 (MQ=255)
                                                                ccAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcctcttcgaagatgcggaagaccacgccgggaactcgaccgcggcatttaacatc                                                                             >  2:1012650‑M1/1‑79 (MQ=255)
                                                                 cAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCAAGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatcc                                                                            <  1:298271‑M1/143‑66 (MQ=255)
                                                                        tGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatgg                                                                     >  1:880377‑M1/1‑71 (MQ=255)
                                                                          gCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtc                                                                   >  1:993888‑M1/1‑69 (MQ=255)
                                                                            aaCCCGCCCGGAGCTGGCAGACATCGACGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATcgccttctccttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgt                                                                 <  2:684319‑M1/143‑77 (MQ=255)
                                                                              ccggccggggaCTGGAAGACATCGAAGCATCGGCACGTTTCTTTGACGACGACGACGGCCTGCATctcgtgcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtct                                                               <  2:744683‑M1/140‑79 (MQ=255)
                                                                               ccgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGATGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatgggcgtctg                                                              >  1:128724‑M1/1‑64 (MQ=255)
                                                                               ccgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttatttcaaggtgcggacgatcacgccggtcacccccgtgtggcatttaccatccgtgatggtcgtcgg                                                              >  2:879148‑M1/1‑64 (MQ=255)
                                                                                cgcccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgt                                                             <  2:649512‑M1/143‑81 (MQ=255)
                                                                                   ccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgttta                                                          >  2:994413‑M1/1‑60 (MQ=255)
                                                                                   ccgGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcgtctttgaagatgcggaagatcacgccggtaactctactgtggcatttaccatccgtgatggtcgtctgttta                                                          <  1:152551‑M1/143‑84 (MQ=255)
                                                                                       gacTGCAAGACGTCGGAGCATCGGCACGGTTCTTTGAAGACGACGACGGGCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactct                                                      <  2:463332‑M1/142‑88 (MQ=255)
                                                                                       cacTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagctgcggcagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactct                                                      <  2:637402‑M1/142‑88 (MQ=255)
                                                                                           ggAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgt                                                  <  2:475967‑M1/143‑92 (MQ=255)
                                                                                            gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtt                                                            <  1:800789‑M1/132‑82 (MQ=255)
                                                                                            gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtt                                                            >  2:800789‑M1/1‑51 (MQ=255)
                                                                                            gAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatgggcgtctgtttactctacgtg                                                 >  1:11135‑M1/1‑51 (MQ=255)
                                                                                                 agacgaaGCACTGGCGCGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgt                                            <  2:107176‑M1/140‑98 (MQ=255)
                                                                                                  aTCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttacgatccgtgatggtcgtctgtttactctgcgtgggcgtg                                           >  1:319105‑M1/1‑45 (MQ=255)
                                                                                                    cGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa                                         <  1:994413‑M1/143‑101 (MQ=255)
                                                                                                    cGAAGCATCGGCACGTTTCTTTGAAGACAAATATGGCCTGCATctcctgctccttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaa                                         <  2:249617‑M1/143‑101 (MQ=255)
                                                                                                     gAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaac                                        >  2:731303‑M1/1‑42 (MQ=255)
                                                                                                        gCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgc                                     <  2:414046‑M1/143‑105 (MQ=255)
                                                                                                                   tttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgt                          <  1:930857‑M1/143‑116 (MQ=255)
                                                                                                                    ttCTTTGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgcgcgtgaactgcccgcttctcgtc                         >  2:1009312‑M1/1‑27 (MQ=255)
                                                                                                                        ttGAAGACGACGACGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgta                     <  1:625753‑M1/143‑121 (MQ=255)
                                                                                                                          gAAGACGCCGACGGCCTGCATctccttcttcttcttcgaagatgccgaagatcacgccggtatctccactgtggcctttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatc                   <  1:531519‑M1/143‑123 (MQ=255)
                                                                                                                          gAAGACGACGACGGCCTGCATcgccttcttctgctttgaagatgcggaagagcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatc                   <  1:445646‑M1/143‑123 (MQ=255)
                                                                                                                             gacgacgacGGCCTGCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgta                <  2:880377‑M1/143‑126 (MQ=255)
                                                                                                                                gacgacgGCCTGCATgtccggcgtcctctttgaagatgcggaagatcacgccggtaactccactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgc             <  1:358875‑M1/143‑129 (MQ=255)
                                                                                                                                      ggCCTGCATctcctccgtcttctttgaagatgcggaagatcacgccggtaactcactgtggcatttaccatccgtgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtgcccg       <  1:898256‑M1/143‑135 (MQ=255)
                                                                                                                                           gCATctccttcttcttctttgaagatgcggaagatcacgccggtaactccaccgacagagttaccatcactgatggtcgtctgtttactctgcgtgagcgtgaactgcccgcttttcgtctgtatcgtatgcgtgcccgtagc  >  2:720367‑M1/1‑4 (MQ=255)
                                                                                                                                              |                                                                                                                                           
CAGTATGGATTGATCTTGTCGAACCGGACGACGACGAGCGACTGCGCGTACAATCTGAACTTGGCCAGAGCCTGGCAACCCGCCCGGAACTGGAAGACATCGAAGCATCGGCACGTTTCTTTGAAGACGACGACGGCCTGCATATTCACTCCTTCTTCTTCTTTGAAGATGCGGAAGATCACGCCGGTAACTCCACTGTGGCATTTACCATCCGTGATGGTCGTCTGTTTACTCTGCGTGAGCGTGAACTGCCCGCTTTTCGTCTGTATCGTATGCGTGCCC  >  NC_000913/4001502‑4001783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.