Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258675 258683 9–776 61 [0] [0] 62 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)57 (0.810) 48/264 0.5 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257768‑258049
                                                                                                                                           |                                                                                                                                              
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             <  1:1102987‑M1/143‑4 (MQ=255)
ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAAAGACGTTACAGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             >  1:570073‑M1/1‑140 (MQ=255)
  aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGCGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgc                                                                                                                                           >  2:1111264‑M1/1‑138 (MQ=255)
   aaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGCTTGGACACCCGATGAGCAGATTGATCAAAAAATTTACAGCACTAGGCCCGTCTATTCATAAAGTTAagagcc                                                                                                                                          >  1:1122388‑M1/1‑137 (MQ=255)
    aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaa                                                                                                                                         >  1:771556‑M1/1‑136 (MQ=255)
           cTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAGGGTAagtgcaaggataat                                                                                                                                  >  1:1170232‑M1/1‑129 (MQ=255)
            tAAGTTTTGGCAATTTGGCAGAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGCTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatactc                                                                                                                                 <  2:301380‑M1/143‑16 (MQ=255)
               aTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                              <  1:646773‑M1/143‑19 (MQ=255)
               aTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACAACCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                              >  1:850428‑M1/1‑125 (MQ=255)
                     ccAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt                                                                                                                        <  1:535810‑M1/143‑25 (MQ=255)
                        aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGCAGAGCAGCTGGATCAAAAGAACATCGGCTCGATGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     <  2:286970‑M1/143‑28 (MQ=255)
                              tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGGGCAAAAAATTTACCGCACGAGGGCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtc                                                                                                               <  1:1056062‑M1/143‑34 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            >  1:1009726‑M1/1‑107 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            <  2:964176‑M1/143‑37 (MQ=255)
                                 aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            <  1:13859‑M1/143‑37 (MQ=255)
                                   cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                          <  1:777239‑M1/143‑39 (MQ=255)
                                    aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCCGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcggttgtcttgctg                                                                                                         >  1:281770‑M1/1‑104 (MQ=255)
                                           tcagcacagcagaTAGCAATGACGTTACCGAGTGAACACCCGAAGAGCAGAGTGATCAAAAAACTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgt                                                                                                  <  1:123376‑M1/138‑47 (MQ=255)
                                           tCACAACAGGAGATAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt                                                                                                  <  1:433291‑M1/143‑47 (MQ=255)
                                               aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              >  2:158543‑M1/1‑93 (MQ=255)
                                               aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGAAGGAGCAAAAAATTGACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  1:456942‑M1/143‑51 (MQ=255)
                                               aacaGGAGATAGCAATGACGTGACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  1:438504‑M1/143‑51 (MQ=255)
                                               aacaGGAGAAAGCAATGACGTTAGCGGGTGGAGACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  1:363191‑M1/143‑51 (MQ=255)
                                                      tatAGCAATGGCGTTACCGGTTGCGCACGCGAAGAGCAGATTGATCAAAAAATTTACCGCACTATGCCCGTATATTCGTGAAGGGAagtgcatagataatcgattctttttcgattgtcgggctgtatgcgtcaacgtgaaac                                                                                       <  2:541513‑M1/142‑58 (MQ=255)
                                                      gaTAGCAAGGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGTCCTAGGCCCGTATATCCGTGAAGGTAagtgcaaagatactcgatcctcctgcggttgtctggctgtatgcgtcaacgtgaaac                                                                                       <  2:665315‑M1/143‑58 (MQ=255)
                                                        tAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtccgggtgtatgcgtcaacgtgcaaccg                                                                                     >  2:1063290‑M1/1‑84 (MQ=255)
                                                            aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGAACTAGGCCCGTATATTAGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctgtagtcgtccacgagaaacgggcaa                                                                                 >  2:121789‑M1/1‑80 (MQ=255)
                                                             aTGACTTTACCGAGTGAACACCCGAAGAGCAGATTGATCAAAAAATGTGCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc                                                                                <  1:510892‑M1/143‑65 (MQ=255)
                                                                 cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                            <  1:398978‑M1/143‑69 (MQ=255)
                                                                      ccGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                       >  1:92763‑M1/1‑70 (MQ=255)
                                                                       cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      >  1:402807‑M1/1‑69 (MQ=255)
                                                                       cGAGGGGACACCCGGAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagggcaaagataagcgatgcttgttcgatggtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      <  2:731135‑M1/143‑75 (MQ=255)
                                                                        gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaacccggcaccgcaagtacgtg                                                                     >  1:1266642‑M1/1‑68 (MQ=255)
                                                                               cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                              <  2:1009726‑M1/143‑83 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacccgcaccggaagtgcgtgaattctgggg                                                           >  1:76555‑M1/1‑58 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    <  2:248308‑M1/86‑29 (MQ=255)
                                                                                  ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                    >  1:248308‑M1/1‑58 (MQ=255)
                                                                                    gAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggct                                                         >  1:1107888‑M1/1‑56 (MQ=255)
                                                                                             aTTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggaagtgcgtgaatcctggggctgctggatgg                                                >  2:1228437‑M1/1‑47 (MQ=255)
                                                                                               tgctcaaAAAATTTACCTCACTAGGCCCGTATATTCGTGAAGGTAagtccaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                              <  1:1003221‑M1/140‑99 (MQ=255)
                                                                                               tGATCAAAAAATTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                              <  1:1246227‑M1/143‑99 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggccccggcagtgcgtcacttctcgcgctggcggagggagct                                            >  2:1142021‑M1/1‑43 (MQ=255)
                                                                                                 aTCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                            <  1:755255‑M1/143‑101 (MQ=255)
                                                                                                  tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                           >  1:421263‑M1/1‑42 (MQ=255)
                                                                                                    aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcgtgtgtggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcggga                                         >  2:655979‑M1/1‑40 (MQ=255)
                                                                                                    aaaaaaTGTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggaggatggagctgga                                         >  2:31311‑M1/1‑40 (MQ=255)
                                                                                                          gttaCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattttctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                   <  2:1089635‑M1/142‑110 (MQ=255)
                                                                                                             aCCGCACTCGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                                <  1:580507‑M1/143‑113 (MQ=255)
                                                                                                                  aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                           >  2:1246627‑M1/1‑26 (MQ=255)
                                                                                                                    tAGGTCCGTTTATTCTTTAAGGTAtgtgcaaagattatcgattctttttcgattgtctggctgtatgcgtcaacgggaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                         <  1:236302‑M1/143‑120 (MQ=255)
                                                                                                                        cccGTATATTCGTGACGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggacgtgcgtgaattctggggctggtggatggagccggcagcgcaggactcccgttttc                     >  1:68513‑M1/1‑20 (MQ=255)
                                                                                                                         gcttatattaGTGAAGGTAagtacaaagattaacgattattttttgattgtctggctttatgcgtcaaagtgaaaccggcaccggaagtgcgtgaattctggcgctggtggatggagctttaagcgcaggaatcccgttttac                    <  2:1146710‑M1/140‑125 (MQ=255)
                                                                                                                            tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                 <  1:862016‑M1/143‑128 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca               <  2:690308‑M1/143‑130 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     >  1:182780‑M1/1‑14 (MQ=255)
                                                                                                                              tatTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                     <  2:182780‑M1/41‑28 (MQ=255)
                                                                                                                                ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaggcgcaggaatcccgttttacttacagt             >  1:1143323‑M1/1‑12 (MQ=255)
                                                                                                                                    tGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgtaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaataccgttttacctacagttacc         >  2:444655‑M1/1‑8 (MQ=255)
                                                                                                                                        ggTAagtgcaaagataatcgatcctttttcgattgtctggctgtatacgtcaacgtgaaaccggcaccggaagtgcgtgaattctgtggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt     <  2:54526‑M1/143‑140 (MQ=255)
                                                                                                                                          gaagtgcaaagatactccattctcttgcgcttgtctggctgtaggcgtcaacgggaacccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg   <  2:1170232‑M1/142‑142 (MQ=255)
                                                                                                                                           aagggcaaagataatcgattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttgg  <  1:1109802‑M1/143‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                              
TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257768‑258049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: