Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 75 [0] [0] 75 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)70 (1.010) 56/260 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCC  >  NC_000913/3815799‑3816081
                                                                                                                                              |                                                                                                                                            
acacctgcttgctaagcgcaaattcaataaactggcgcttatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                                                              <  1:1275694‑M2/1‑1 (MQ=255)
 ccccggctggctaagcgcaacgtcaataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCg                                                                                                                                             <  1:906680‑M2/2‑1 (MQ=255)
   cctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTc                                                                                                                                           >  2:1095534‑M2/140‑143 (MQ=255)
    ctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttcaaaatcaggatgccagcgccgccgtcaccCGTcc                                                                                                                                          >  2:13251‑M2/139‑143 (MQ=255)
        ttgctaagcgcaaattcaataatctggcgttgatatggtttcatgccttcgctccgcatcttactgttcgacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                      <  1:16091‑M2/9‑1 (MQ=255)
          gctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCa                                                                                                                                    <  1:1057739‑M2/11‑1 (MQ=255)
            taagcgcaaattcgataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaacggcgacccatcagtcgccttaaaaatcagtttgccagcgccgccttctgcGGTCCCCTGCACt                                                                                                                                  >  2:720567‑M2/131‑143 (MQ=255)
            taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                                                                  >  1:993616‑M2/131‑143 (MQ=255)
            caagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                                                                  <  1:866224‑M2/13‑1 (MQ=255)
               gcgcaaattcattaaccggccgctgacatggtttcatgcctccgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                                                               <  1:496186‑M2/16‑1 (MQ=255)
               gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCacttaa                                                                                                                               >  1:499527‑M2/128‑141 (MQ=255)
                cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                              <  1:1093763‑M2/17‑1 (MQ=255)
                cgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                              >  1:788255‑M2/127‑143 (MQ=255)
                cgcaaagttaataagccggcgctgatatggtttcatgccttcgctcctcatctttcttttctgcagacaaaaaaaaggcgactcatcagtcgccttaataatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                                                              <  1:733526‑M2/17‑1 (MQ=255)
                 acagactcactacacttgcgctgatattgtttcatgcctgtgcccctcatcttacttttttacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTCCACTTCAat                                                                                                                             <  2:780069‑M2/18‑1 (MQ=255)
                   aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatga                                                                                                                           >  1:372841‑M2/124‑143 (MQ=255)
                     attcaataaactggcgcggatatggtttcatgccttcgctcctcatcttactgctctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                         <  1:801845‑M2/22‑1 (MQ=255)
                         cataaactggcgctgatatggtttcatgcattcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                                                                     <  2:318017‑M2/26‑1 (MQ=255)
                                 ggcgctgatatggtttcatgccttcgctcctcatcttacgtttctacagacaaaaaaaaggcgactcatcagtctccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCCGCACTTCAATGATGCGCCCGTCTTCg                                                                                                             <  2:1287467‑M2/34‑1 (MQ=255)
                                 ggcgctgatatggtttcatgccgtcgctcctcatctcacttttctacagacaaaaaaaaggcgacgcatcagtcgccataaaaatgtgtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                             <  1:693100‑M2/34‑1 (MQ=255)
                                   cggtgatatggtttcatgcctccgctcctcagcttacttttctacaccccaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                           <  2:1193242‑M2/36‑1 (MQ=255)
                                   cgctgctatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                           <  2:932275‑M2/36‑1 (MQ=255)
                                   cgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                           >  1:12913‑M2/108‑143 (MQ=255)
                                    gctgatatggtttcatgccttcgcgcctcatcttacttttctaaagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                          <  2:1123475‑M2/37‑1 (MQ=255)
                                      tgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGACGCGCCCGTCTTCGGtcat                                                                                                        >  2:861675‑M2/105‑143 (MQ=255)
                                        atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                      >  1:190040‑M2/103‑143 (MQ=255)
                                        atatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatca                                                                                                      >  2:1085765‑M2/103‑143 (MQ=255)
                                         tatggtttcatgccttcgctcctcatcctacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                     >  1:1117134‑M2/102‑143 (MQ=255)
                                                gcatcccttcgcccctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                              <  2:1202169‑M2/49‑1 (MQ=255)
                                                 catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGCTGCGCCCGTCTTCGGTCATCACTACGTTCa                                                                                             <  1:580540‑M2/50‑1 (MQ=255)
                                                    gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                          >  1:1283261‑M2/91‑143 (MQ=255)
                                                      cttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagaggcctgaaaaagcaatttgccagcgccgccttctgcCGTCACCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCAGGTCg                                                                                        >  1:124649‑M2/89‑143 (MQ=255)
                                                      cttcgctcctcagcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                        <  1:646952‑M2/55‑1 (MQ=255)
                                                      cctcgctccgcatcttactttcctacagacaaaaaaaaggcgcctcatcagtcgccttaaaaatcagttggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                                                                                        <  1:129739‑M2/55‑1 (MQ=255)
                                                        tcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGTCGGt                                                                                      >  1:281153‑M2/87‑143 (MQ=255)
                                                        tcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                                                                      <  1:1095534‑M2/57‑1 (MQ=255)
                                                           atgctcatctgactgctcgacacactaacgaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctc                                                                                   <  2:145395‑M2/60‑1 (MQ=255)
                                                               tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCCGAACATCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg                                                                               <  1:1285520‑M2/64‑1 (MQ=255)
                                                                    ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCCGTCTCTGCGGcagg                                                                          >  1:607415‑M2/75‑142 (MQ=255)
                                                                    ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                          <  1:665795‑M2/69‑1 (MQ=255)
                                                                    ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                                                                          <  1:158090‑M2/69‑1 (MQ=255)
                                                                     tacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTGCGTCTCTGCGGGagag                                                                         >  1:952153‑M2/74‑143 (MQ=255)
                                                                      acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt                                                                        <  2:372841‑M2/71‑1 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                                      >  1:698631‑M2/71‑143 (MQ=255)
                                                                        ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGACTCTTCGTCAGAGtca                                                                      >  2:4716‑M2/71‑142 (MQ=255)
                                                                         tttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCtt                                                                     <  1:341521‑M2/74‑1 (MQ=255)
                                                                            ctacagagaaaaaaaaggcgccgcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                                                                  <  2:300866‑M2/77‑1 (MQ=255)
                                                                                  acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGCTCATGTCGGTCTCTGCCGCAGAGTCTTCGACGTatc                                                            >  1:480943‑M2/61‑142 (MQ=255)
                                                                                   caaaaaaaaggcgacccatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTc                                                           <  1:265503‑M2/84‑1 (MQ=255)
                                                                                    aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                          >  1:205163‑M2/59‑143 (MQ=255)
                                                                                      aaaaaaggcgactcatcagtcgccttaaacatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCAAGTATTCCAg                                                        >  2:488761‑M2/57‑143 (MQ=255)
                                                                                      aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg                                                        <  1:1085765‑M2/87‑1 (MQ=255)
                                                                                       aaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGa                                                       <  1:972204‑M2/88‑1 (MQ=255)
                                                                                        aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGCCTCCTTCGTATTCcagtt                                                      >  1:426026‑M2/55‑141 (MQ=255)
                                                                                        aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTCCAACGTATTCcagct                                                      >  2:624003‑M2/55‑141 (MQ=255)
                                                                                               gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAc                                               <  2:190040‑M2/96‑1 (MQ=255)
                                                                                                    atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACTTTTATGTCGGTCTCTGCGGCATAGTCTTCTACGTATTCCCGATCGCAAACtgcat                                          >  1:808776‑M2/43‑141 (MQ=255)
                                                                                                    atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCCCTACGTTCCTTTCGGTCTCTGCGGCAGACCCTTCAACGTATTCCACATCCCGACCCGctc                                          >  2:318408‑M2/43‑142 (MQ=255)
                                                                                                    atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGATCGCAAACCGCtt                                          >  1:658121‑M2/43‑143 (MQ=255)
                                                                                                    atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGAGGCAGAGCCTTCAACGGATTGCACCTCACAAACGGCtt                                          >  2:515462‑M2/43‑143 (MQ=255)
                                                                                                         tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                                     >  2:744560‑M2/38‑143 (MQ=255)
                                                                                                             cttaaatgtcagtttgccagcgccgccttctgcCGTCCCCTGCTCTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTca                                 <  2:713383‑M2/110‑1 (MQ=255)
                                                                                                               taaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAGATCGCACACCGCTTCGCCGTTcaca                               >  2:154506‑M2/32‑143 (MQ=255)
                                                                                                                    atcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAATCGCTTCGCCGTTCACAATTcc                          <  2:1044470‑M2/117‑1 (MQ=255)
                                                                                                                      cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGa                        <  2:12913‑M2/119‑1 (MQ=255)
                                                                                                                       ggtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc                       <  2:778803‑M2/120‑1 (MQ=255)
                                                                                                                         tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGATGGCAAACCGCTTCGCCGTTCACCATTCCCACAg                     >  2:1273081‑M2/22‑143 (MQ=255)
                                                                                                                         tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAg                     >  1:858712‑M2/22‑143 (MQ=255)
                                                                                                                            gccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACACaaa                  <  2:1181152‑M2/125‑1 (MQ=255)
                                                                                                                             ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAAc                 >  1:646793‑M2/18‑143 (MQ=255)
                                                                                                                                      ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCTGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAc        >  1:709193‑M2/9‑143 (MQ=255)
                                                                                                                                       cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACATTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTGcc       >  1:723675‑M2/8‑143 (MQ=255)
                                                                                                                                       ctcctccCGTCCCCTGTCCTTCGATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc       <  2:912880‑M2/136‑1 (MQ=255)
                                                                                                                                           tgcCGTTCCCTGCACTTCTGTGCTGCTCCCGTCTTCGGTCATCACTACGTTCATGTCGGTTTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc   <  2:72612‑M2/140‑1 (MQ=255)
                                                                                                                                            gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACCATTTCGCCAGAAACTACGGCTACCATccc  >  1:359641‑M2/3‑143 (MQ=255)
                                                                                                                                              |                                                                                                                                            
ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCC  >  NC_000913/3815799‑3816081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: